CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER92695
EER92981
EER93338
EER97436
EES02774
EES13281
EES14305
KXG27287
KXG36255
OQU81583

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14250.1	KXG36255	AT1G02090.1	12615944
AT5G14250.1	KXG36255	AT1G02090.1	15703063
AT5G14250.1	KXG27287	AT1G22920.1	11742986
AT5G14250.1	KXG27287	AT1G22920.1	15703063
AT5G14250.1	KXG27287	AT1G71230.1	11742986
AT5G14250.1	EES02774	AT2G26990.1	12615944
AT5G14250.1	EES02774	AT2G26990.1	15703063
AT5G14250.1	EER97436	AT3G13550.1	11877375
AT5G14250.1	EER92981	AT3G61140.1	12615944
AT5G14250.1	EER92981	AT3G61140.1	15703063
AT5G14250.1	OQU81583	AT4G14110.1	11742986
AT5G14250.1	OQU81583	AT4G14110.1	12615944
AT5G14250.1	OQU81583	AT4G14110.1	15703063
AT5G14250.1	EES13281	AT5G14250.1	12615944
AT5G14250.1	EER92695	AT5G42970.1	11742986
AT5G14250.1	EER92695	AT5G42970.1	12615944
AT5G14250.1	EER92695	AT5G42970.1	15703063
AT5G14250.1	EER93338	AT5G46210.1	16844902
AT5G14250.1	EES14305	AT5G56280.1	11701877
AT5G14250.1	EES14305	AT5G56280.1	12615944
AT5G14250.1	EES14305	AT5G56280.1	15703063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d049652_P001	Maize	cytosol	91.14	92.0
Zm00001d035130_P001	Maize	cytosol	92.54	85.19
Os08t0119000-01	Rice	cytosol	80.89	81.46
Zm00001d028517_P001	Maize	cytosol	20.28	79.09
TraesCS7D01G312600.2	Wheat	cytosol	76.69	77.05
TraesCS7B01G216600.2	Wheat	cytosol	76.46	76.81
TraesCS7A01G315600.1	Wheat	cytosol	72.96	73.65
GSMUA_Achr11P...	Banana	cytosol	67.83	68.96
HORVU7Hr1G075150.4	Barley	mitochondrion	75.99	66.94
GSMUA_AchrUn_...	Banana	cytosol	63.87	66.83
KRH57651	Soybean	cytosol	63.64	64.54
KRG94317	Soybean	cytosol	63.17	64.07
VIT_14s0171g00270.t01	Wine grape	cytosol	62.94	63.68
Solyc02g093920.2.1	Tomato	cytosol	63.17	63.32
PGSC0003DMT400052100	Potato	cytosol	62.7	62.85
Bra006246.1-P	Field mustard	cytosol	55.24	56.29
CDX78568	Canola	cytosol	54.78	55.82
CDX91076	Canola	cytosol	55.24	55.63
Bra023453.1-P	Field mustard	cytosol	55.01	55.53
AT5G14250.1	Thale cress	cytosol	55.48	55.48
CDX85608	Canola	cytosol	54.55	55.06
CDX78656	Canola	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	28.21	48.21
Bra006326.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	27.97	48.0
CDX70553	Canola	mitochondrion	38.0	44.66
CDY26433	Canola	mitochondrion	30.77	30.0

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.3	EntrezGene:8066119	UniProt:C5YMH2	InterPro:CSN3	EnsemblPlants:EES13281
ProteinID:EES13281	ProteinID:EES13281.1	GO:GO:0000338	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	GO:GO:0005829	GO:GO:0006464	GO:GO:0006511	GO:GO:0007049
GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009056	GO:GO:0009987	GO:GO:0010971
GO:GO:0019538	InterPro:IPR000717	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10758
PANTHER:PTHR10758:SF1	SMART:SM00088	SMART:SM00753	EnsemblPlantsGene:SORBI_3007G022700	SUPFAM:SSF46785	unigene:Sbi.2357
UniParc:UPI0001A87787	InterPro:WH_DNA-bd_sf	RefSeq:XP_002443786.1	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr7:+:2064838..2068858

Molecular Weight (calculated)

47892.6 Da

IEP (calculated)

6.017

GRAVY (calculated)

-0.094

Length

429 amino acids

Sequence
(BLAST)

001: MESLEALVAH IQGLSGSPEE VAHLHSLLKQ ADGDSLRAHA AALLPFLAHL SPETHSLGYL YLLEACATSG SNLSDFGGGD FLVTIAGFLT ACSADQIRLA
101: PDKFLNVCRV LKDQVMQLNM PIRGIAPLRA AVRKIQSSPE QLTPLHADYL LLCLLAKQYK AGLSVLEDDI FEVDQPKDLF LYCYYGGMIY IGLKKFPKAL
201: ELLHNAVTAP MSMLNAIAIE AYKKYVLVSL IVNGQVPSFP KYTSVSGQRS MKIHAQIYVE LSTSYSNGRY TDLEIFVQAN SATFQSDNNL GLVKQVLSSM
301: YKRNIQRLTQ TYLTLSLEDI ARSVQLETPR DAEMHVLRMI EDGEIHATIN QKDGMVSFHE DPEQYKSVEM VEHIDSSIQR LTALSKKLAS IDENMSCDPA
401: YLMKTGRDRG RFDGRFDYDD YDSVPHKFF

Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)

001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM

Arabidopsis Description

CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.