Factsheet for Bra023453.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000529.1-P
Bra002827.1-P
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra017569.1-P
Bra022023.1-P
Bra023453.1-P
Bra024548.1-P
Bra025031.1-P
Bra027422.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G14250.1	Bra012303.1-P	AT1G02090.1	12615944
AT5G14250.1	Bra032666.1-P	AT1G02090.1	12615944
AT5G14250.1	Bra033219.1-P	AT1G02090.1	12615944
AT5G14250.1	Bra012303.1-P	AT1G02090.1	15703063
AT5G14250.1	Bra032666.1-P	AT1G02090.1	15703063
AT5G14250.1	Bra033219.1-P	AT1G02090.1	15703063
AT5G14250.1	Bra012351.1-P	AT1G22920.1	11742986
AT5G14250.1	Bra024548.1-P	AT1G22920.1	11742986
AT5G14250.1	Bra012351.1-P	AT1G22920.1	15703063
AT5G14250.1	Bra024548.1-P	AT1G22920.1	15703063
AT5G14250.1	Bra000529.1-P	AT2G26990.1	12615944
AT5G14250.1	Bra012038.1-P	AT2G26990.1	12615944
AT5G14250.1	Bra000529.1-P	AT2G26990.1	15703063
AT5G14250.1	Bra012038.1-P	AT2G26990.1	15703063
AT5G14250.1	Bra027422.1-P	AT3G13550.1	11877375
AT5G14250.1	Bra003438.1-P	AT3G61140.1	12615944
AT5G14250.1	Bra007576.1-P	AT3G61140.1	12615944
AT5G14250.1	Bra003438.1-P	AT3G61140.1	15703063
AT5G14250.1	Bra007576.1-P	AT3G61140.1	15703063
AT5G14250.1	Bra032760.1-P	AT4G14110.1	11742986
AT5G14250.1	Bra038444.1-P	AT4G14110.1	11742986
AT5G14250.1	Bra032760.1-P	AT4G14110.1	12615944
AT5G14250.1	Bra038444.1-P	AT4G14110.1	12615944
AT5G14250.1	Bra032760.1-P	AT4G14110.1	15703063
AT5G14250.1	Bra038444.1-P	AT4G14110.1	15703063
AT5G14250.1	Bra006246.1-P	AT5G14250.1	12615944
AT5G14250.1	Bra006326.1-P	AT5G14250.1	12615944
AT5G14250.1	Bra023453.1-P	AT5G14250.1	12615944
AT5G14250.1	Bra033654.1-P	AT5G42970.1	11742986
AT5G14250.1	Bra035336.1-P	AT5G42970.1	11742986
AT5G14250.1	Bra033654.1-P	AT5G42970.1	12615944
AT5G14250.1	Bra035336.1-P	AT5G42970.1	12615944
AT5G14250.1	Bra033654.1-P	AT5G42970.1	15703063
AT5G14250.1	Bra035336.1-P	AT5G42970.1	15703063
AT5G14250.1	Bra017569.1-P	AT5G46210.1	16844902
AT5G14250.1	Bra022023.1-P	AT5G46210.1	16844902
AT5G14250.1	Bra025031.1-P	AT5G46210.1	16844902
AT5G14250.1	Bra002827.1-P	AT5G56280.1	11701877
AT5G14250.1	Bra002827.1-P	AT5G56280.1	12615944
AT5G14250.1	Bra002827.1-P	AT5G56280.1	15703063

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX85608	Canola	cytosol	98.12	98.12
Bra006246.1-P	Field mustard	cytosol	84.71	85.51
AT5G14250.1	Thale cress	cytosol	79.06	78.32
Bra006326.1-P	Field mustard	endoplasmic reticulum, mitochondrion, plasma membrane, plastid	40.71	69.2
VIT_14s0171g00270.t01	Wine grape	cytosol	65.65	65.8
KRH57651	Soybean	cytosol	64.47	64.78
KRG94317	Soybean	cytosol	63.29	63.59
Solyc02g093920.2.1	Tomato	cytosol	62.82	62.38
PGSC0003DMT400052100	Potato	cytosol	62.82	62.38
GSMUA_Achr11P...	Banana	cytosol	57.18	57.58
Os08t0119000-01	Rice	cytosol	56.24	56.1
GSMUA_AchrUn_...	Banana	cytosol	53.65	55.61
EES13281	Sorghum	cytosol	55.53	55.01
TraesCS7D01G312600.2	Wheat	cytosol	54.12	53.86
TraesCS7B01G216600.2	Wheat	cytosol	53.88	53.63
Zm00001d049652_P001	Maize	cytosol	52.71	52.71
TraesCS7A01G315600.1	Wheat	cytosol	51.06	51.06
Zm00001d035130_P001	Maize	cytosol	55.06	50.21
HORVU7Hr1G075150.4	Barley	mitochondrion	53.41	46.61
Zm00001d028517_P001	Maize	cytosol	12.0	46.36

Protein Annotations

Gene3D:1.25.40.570	MapMan:19.2.3.3.1.3	EnsemblPlantsGene:Bra023453	EnsemblPlants:Bra023453.1	EnsemblPlants:Bra023453.1-P	InterPro:CSN3
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0008180	InterPro:IPR000717
UniProt:M4E3V0	InterPro:PCI_dom	PFAM:PF01399	PFscan:PS50250	PANTHER:PTHR10758	PANTHER:PTHR10758:SF1
SMART:SM00088	SMART:SM00753	SUPFAM:SSF46785	UniParc:UPI000254355C	InterPro:WH_DNA-bd_sf	SEG:seg

Description

AT5G14250 (E=1e-180) COP13, CSN3, FUS11 | COP13 (CONSTITUTIVE PHOTOMORPHOGENIC 13); protein binding

Coordinates

chrA02:+:3430227..3432780

Molecular Weight (calculated)

47649.8 Da

IEP (calculated)

6.248

GRAVY (calculated)

-0.054

Length

425 amino acids

Sequence
(BLAST)

001: MSSTENLITS IQGLSASSGD LSALHRILKG AEETLRADSD LELSTLEQLD ASKHSLGYLY LLDVLTCGPM SKEKALDVVL LISRFITSCD AEQIRIASDK
101: FVSLCKRFKD RVLELEDPLR GVAPLLSAVR KVQVSSKRLT ALHPDCLQLC LLAKCYKAGF SILSDDILEV DQPRDFYLYC YYGGIICIGQ KKFQKALELL
201: YNVVTAPMHS LNAIALEAYK KYVLVTLIHS GQFSVSLPKC ASTAAQRHLK TWSLPYTEVG NCYNEGNISE LQAVVVAHSS DFEKDNNLGL VKQAVSSLYK
301: RNILRLTQKY LTLSLQDIAN MVQLANAKEA EMHVLQMIQD GQIHALINQK DGMVRFLEDP EQYKTSEMIE VMDSVIQRTI MLSKNLIAMD ESLSCDPLYL
401: GKVGRERQRY DFGEDFDTVP QKFSM

Best Arabidopsis Sequence Match ( AT5G14250.1 )
(BLAST)

001: MIGAVNSVEA VITSIQGLSG SPEDLSALHD LLRGAQDSLR AEPGVNFSTL DQLDASKHSL GYLYFLEVLT CGPVSKEKAA YEIPIIARFI NSCDAGQIRL
101: ASYKFVSLCK ILKDHVIALG DPLRGVGPLL NAVQKLQVSS KRLTALHPDV LQLCLQAKSY KSGFSILSDD IVEIDQPRDF FLYSYYGGMI CIGLKRFQKA
201: LELLYNVVTA PMHQVNAIAL EAYKKYILVS LIHNGQFTNT LPKCASTAAQ RSFKNYTGPY IELGNCYNDG KIGELEALVV ARNAEFEEDK NLGLVKQAVS
301: SLYKRNILRL TQKYLTLSLQ DIANMVQLGN AKEAEMHVLQ MIQDGQIHAL INQKDGMVRF LEDPEQYKSS EMIEIMDSVI QRTIGLSKNL LAMDESLSCD
401: PLYLGKVGRE RQRYDFGDDF DTVPQKFSM

Arabidopsis Description

CSN3COP9 signalosome complex subunit 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8W575]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.