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Field mustard
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Field mustard
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 3
  • cytosol 3
  • mitochondrion 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol
Any Predictor:cytosol, mitochondrion, nucleus
BaCelLo:nucleus
EpiLoc:nucleus
MultiLoc:cytosol
Plant-mPloc:nucleus
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
PPI

Inferred distinct locusB in Crop

locusBlocations
Bra000529.1-P
Bra003438.1-P
Bra006246.1-P
Bra006326.1-P
Bra007220.1-P
Bra007576.1-P
Bra012038.1-P
Bra012303.1-P
Bra012351.1-P
Bra022520.1-P
Bra023453.1-P
Bra024548.1-P
Bra032666.1-P
Bra032760.1-P
Bra033219.1-P
Bra033654.1-P
Bra035336.1-P
Bra038444.1-P

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G61140.1 Bra012303.1-P AT1G02090.1 10330469
AT3G61140.1 Bra032666.1-P AT1G02090.1 10330469
AT3G61140.1 Bra033219.1-P AT1G02090.1 10330469
AT3G61140.1 Bra012303.1-P AT1G02090.1 11742986
AT3G61140.1 Bra032666.1-P AT1G02090.1 11742986
AT3G61140.1 Bra033219.1-P AT1G02090.1 11742986
AT3G61140.1 Bra012303.1-P AT1G02090.1 11854419
AT3G61140.1 Bra032666.1-P AT1G02090.1 11854419
AT3G61140.1 Bra033219.1-P AT1G02090.1 11854419
AT3G61140.1 Bra012303.1-P AT1G02090.1 12615944
AT3G61140.1 Bra032666.1-P AT1G02090.1 12615944
AT3G61140.1 Bra033219.1-P AT1G02090.1 12615944
AT3G61140.1 Bra012351.1-P AT1G22920.1 12615944
AT3G61140.1 Bra024548.1-P AT1G22920.1 12615944
AT3G61140.1 Bra012351.1-P AT1G22920.1 9811788
AT3G61140.1 Bra024548.1-P AT1G22920.1 9811788
AT3G61140.1 Bra000529.1-P AT2G26990.1 11854419
AT3G61140.1 Bra012038.1-P AT2G26990.1 11854419
AT3G61140.1 Bra000529.1-P AT2G26990.1 12615944
AT3G61140.1 Bra012038.1-P AT2G26990.1 12615944
AT3G61140.1 Bra007220.1-P AT3G56150.1 11029466
AT3G61140.1 Bra022520.1-P AT3G56150.1 11029466
AT3G61140.1 Bra003438.1-P AT3G61140.1 12615944
AT3G61140.1 Bra007576.1-P AT3G61140.1 12615944
AT3G61140.1 Bra032760.1-P AT4G14110.1 11701877
AT3G61140.1 Bra038444.1-P AT4G14110.1 11701877
AT3G61140.1 Bra032760.1-P AT4G14110.1 12615944
AT3G61140.1 Bra038444.1-P AT4G14110.1 12615944
AT3G61140.1 Bra032760.1-P AT4G14110.1 9811788
AT3G61140.1 Bra038444.1-P AT4G14110.1 9811788
AT3G61140.1 Bra006246.1-P AT5G14250.1 12615944
AT3G61140.1 Bra006326.1-P AT5G14250.1 12615944
AT3G61140.1 Bra023453.1-P AT5G14250.1 12615944
AT3G61140.1 Bra033654.1-P AT5G42970.1 11854419
AT3G61140.1 Bra035336.1-P AT5G42970.1 11854419
AT3G61140.1 Bra033654.1-P AT5G42970.1 12615944
AT3G61140.1 Bra035336.1-P AT5G42970.1 12615944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY52333 Canola cytosol 99.31 97.52
Bra003438.1-P Field mustard cytosol 91.97 88.52
AT3G61140.1 Thale cress cytosol 87.61 86.62
Solyc01g091650.2.1 Tomato cytosol 75.92 75.23
PGSC0003DMT400071374 Potato cytosol 75.46 74.77
VIT_15s0048g01980.t01 Wine grape cytosol 74.31 73.47
KRH65148 Soybean cytosol 74.77 73.42
KRH48239 Soybean cytosol 74.31 72.65
Os03t0116500-01 Rice cytosol 66.97 66.21
TraesCS1D01G187600.1 Wheat cytosol 57.8 65.8
EER92981 Sorghum cytosol 66.51 65.46
GSMUA_Achr11P... Banana cytosol 67.66 65.27
Zm00001d027359_P001 Maize cytosol, extracellular 66.28 64.94
TraesCS4D01G350200.1 Wheat cytosol, golgi 66.06 64.57
HORVU0Hr1G029090.1 Barley endoplasmic reticulum 16.51 64.29
TraesCS4B01G356500.1 Wheat cytosol 65.83 64.21
TraesCS5A01G525900.1 Wheat cytosol, unclear 65.6 64.13
GSMUA_Achr8P11930_001 Banana cytosol 66.28 63.66
GSMUA_Achr11P... Banana cytosol 65.37 63.33
TraesCS1A01G188800.1 Wheat cytosol 62.16 62.16
TraesCS1B01G196500.2 Wheat cytosol 62.61 60.8
HORVU1Hr1G048620.1 Barley plastid 62.61 56.06
Zm00001d048502_P002 Maize cytosol 20.87 53.22
HORVU6Hr1G027500.11 Barley plastid 34.4 52.82
HORVU4Hr1G086160.1 Barley cytosol 63.76 50.55
TraesCS5D01G238500.1 Wheat cytosol 33.49 43.84
TraesCS7B01G257700.1 Wheat plastid 39.45 25.18
Bra013838.1-P Field mustard cytosol 16.28 18.35
Bra023038.1-P Field mustard nucleus 4.36 18.27
Protein Annotations
Gene3D:1.25.40.570MapMan:19.2.3.3.1.1EnsemblPlantsGene:Bra007576EnsemblPlants:Bra007576.1EnsemblPlants:Bra007576.1-PInterPro:CSN1
ncoils:CoilGO:GO:0000338GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005634
GO:GO:0006464GO:GO:0008150GO:GO:0008152GO:GO:0008180GO:GO:0009987GO:GO:0019538
InterPro:IPR000717UniProt:M4CTN2InterPro:PCI_domPFAM:PF01399PFAM:PF10602PFscan:PS50250
PANTHER:PTHR14145PANTHER:PTHR14145:SF2InterPro:Rpn7/CSN1SMART:SM00088SMART:SM00753SUPFAM:SSF46785
UniParc:UPI000254293DInterPro:WH_DNA-bd_sfSEG:seg:::
Description
AT3G61140 (E=9e-215) FUS6, ATFUS6, CSN1, COP11, EMB78, ATSK31, SK31 | FUS6 (FUSCA 6)
Coordinates
chrA09:+:29861175..29863843
Molecular Weight (calculated)
49687.6 Da
IEP (calculated)
7.145
GRAVY (calculated)
-0.433
Length
436 amino acids
Sequence
(BLAST)
001: MERDDESNGP MMEMCTNGGG EETSNRRPII TGEPLDIEAY AAMYKGRTKI MRLLFIANHC GGGNQTMQLE ALRMAYDEVK KGENTQLFRD VVSKINGRLG
101: DKYGMDSAWC EMIDRRAEQR KGKLENELSS YRTNLIKESI RMGHNDFGDF YYACGLLNEA FKNYIKTRDY CTTAKHIIHM CMNAILVSIE MGQFSHVSSY
201: VNKVDQNPET LDPIVAAKLR CASGLAHLEL KKYKLAARKF LDVNPELGSS YNEVIAPQDV ATYGGLCALA SFDRSELKAS FRNFLELVPE VRELINDFYS
301: SRYASCLEYL GSLRANLLLD IHLHDHVDTL YDQIRKKALI QYTLPFVSVD LSRMADAFKT SVSGLEKELE ALITDDQIQA RIDSHNKILY ARHADQRSAT
401: FQKVLQMGNE FDRDVRSMML RANLLKHEYH AKGRKP
Best Arabidopsis Sequence Match ( AT3G61140.1 )
(BLAST)
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.