Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| EER92981 | Sorghum | cytosol | 86.55 | 33.41 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 84.21 | 32.36 |
| Os03t0116500-01 | Rice | cytosol | 73.1 | 28.34 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 70.76 | 27.13 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 70.18 | 26.85 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 69.59 | 26.68 |
| GSMUA_Achr11P... | Banana | cytosol | 59.06 | 22.44 |
| KRH65148 | Soybean | cytosol | 57.89 | 22.3 |
| PGSC0003DMT400071374 | Potato | cytosol | 57.31 | 22.27 |
| KRH48239 | Soybean | cytosol | 57.89 | 22.2 |
| GSMUA_Achr11P... | Banana | cytosol | 58.48 | 22.12 |
| Solyc01g091650.2.1 | Tomato | cytosol | 56.73 | 22.05 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 56.73 | 22.0 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 56.14 | 21.15 |
| CDY65304 | Canola | cytosol | 54.39 | 20.99 |
| Bra007576.1-P | Field mustard | cytosol | 53.22 | 20.87 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 66.67 | 20.73 |
| CDY52333 | Canola | cytosol | 53.22 | 20.5 |
| AT3G61140.1 | Thale cress | cytosol | 51.46 | 19.95 |
| CDY45683 | Canola | cytosol | 51.46 | 19.43 |
| Bra003438.1-P | Field mustard | cytosol | 50.88 | 19.21 |
| CDX67853 | Canola | cytosol | 50.88 | 19.21 |
| Zm00001d017117_P001 | Maize | plasma membrane | 13.45 | 5.91 |
| HORVU6Hr1G027500.11 | Barley | plastid | 8.77 | 5.28 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 2.92 | 4.46 |
| Zm00001d003257_P002 | Maize | plastid | 11.11 | 3.68 |
Protein Annotations
| Gene3D:1.25.40.570 | MapMan:35.1 | ProteinID:AQL09953.1 | ProteinID:AQL09956.1 | InterPro:CSN1 | ncoils:Coil |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | UniProt:K7VM61 |
| PFAM:PF10602 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 | UniParc:UPI000182D3F5 | EnsemblPlantsGene:Zm00001d048502 |
| EnsemblPlants:Zm00001d048502_P002 | EnsemblPlants:Zm00001d048502_T002 | SEG:seg | : | : | : |
Description
COP9 signalosome complex subunit 1
Coordinates
chr9:+:157456648..157464093
Molecular Weight (calculated)
18458.7 Da
IEP (calculated)
4.538
GRAVY (calculated)
-0.374
Length
171 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVEGEVPAA AAAAMANGLG GADEASPAPV SPEQLDVEAY AAQYSGRTRL ARGVFVADRC GVEAIQLEAL RMAYDEIKRG EDVQLDRDVA AKIGGRLGPR
101: YGLDQAWVDT ITRRADQRNE KLENELNGYR TNLIKESIRM GYNDIGDFFY AHGQLSKATS GLGTIAPLPN I
101: YGLDQAWVDT ITRRADQRNE KLENELNGYR TNLIKESIRM GYNDIGDFFY AHGQLSKATS GLGTIAPLPN I
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.