Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH65148 | Soybean | cytosol | 96.41 | 96.85 |
| Solyc01g091650.2.1 | Tomato | cytosol | 81.84 | 82.95 |
| PGSC0003DMT400071374 | Potato | cytosol | 81.61 | 82.73 |
| VIT_15s0048g01980.t01 | Wine grape | cytosol | 80.04 | 80.95 |
| AT3G61140.1 | Thale cress | cytosol | 76.46 | 77.32 |
| HORVU0Hr1G029090.1 | Barley | endoplasmic reticulum | 18.83 | 75.0 |
| CDY45683 | Canola | cytosol | 76.01 | 74.83 |
| CDX67853 | Canola | cytosol | 75.56 | 74.39 |
| CDY52333 | Canola | cytosol | 73.99 | 74.32 |
| Bra007576.1-P | Field mustard | cytosol | 72.65 | 74.31 |
| Bra003438.1-P | Field mustard | cytosol | 75.34 | 74.17 |
| CDY65304 | Canola | cytosol | 73.32 | 73.81 |
| GSMUA_Achr11P... | Banana | cytosol | 73.77 | 72.79 |
| GSMUA_Achr11P... | Banana | cytosol | 71.52 | 70.89 |
| Os03t0116500-01 | Rice | cytosol | 69.96 | 70.75 |
| GSMUA_Achr8P11930_001 | Banana | cytosol | 71.08 | 69.82 |
| TraesCS4B01G356500.1 | Wheat | cytosol | 69.96 | 69.8 |
| EER92981 | Sorghum | cytosol | 69.28 | 69.75 |
| TraesCS4D01G350200.1 | Wheat | cytosol, golgi | 69.73 | 69.73 |
| TraesCS5A01G525900.1 | Wheat | cytosol, unclear | 69.28 | 69.28 |
| TraesCS1D01G187600.1 | Wheat | cytosol | 59.19 | 68.93 |
| Zm00001d027359_P001 | Maize | cytosol, extracellular | 68.16 | 68.31 |
| TraesCS1A01G188800.1 | Wheat | cytosol | 65.25 | 66.74 |
| TraesCS1B01G196500.2 | Wheat | cytosol | 65.7 | 65.26 |
| HORVU1Hr1G048620.1 | Barley | plastid | 65.02 | 59.55 |
| Zm00001d048502_P002 | Maize | cytosol | 22.2 | 57.89 |
| HORVU6Hr1G027500.11 | Barley | plastid | 35.87 | 56.34 |
| HORVU4Hr1G086160.1 | Barley | cytosol | 67.49 | 54.73 |
| TraesCS5D01G238500.1 | Wheat | cytosol | 33.86 | 45.35 |
| TraesCS7B01G257700.1 | Wheat | plastid | 40.81 | 26.65 |
| KRH57190 | Soybean | cytosol | 16.37 | 19.01 |
| KRH03906 | Soybean | nucleus | 16.14 | 18.65 |
| KRH57185 | Soybean | cytosol | 15.47 | 17.88 |
| KRH04710 | Soybean | extracellular | 8.3 | 16.3 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100812958 | MapMan:19.2.3.3.1.1 | EMBL:ACUP02004214 | InterPro:CSN1 | ncoils:Coil |
| EnsemblPlantsGene:GLYMA_07G077100 | GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 |
| UniProt:I1KIH3 | InterPro:IPR000717 | EnsemblPlants:KRH48239 | ProteinID:KRH48239 | ProteinID:KRH48239.1 | InterPro:PCI_dom |
| PFAM:PF01399 | PFAM:PF10602 | PFscan:PS50250 | PANTHER:PTHR14145 | PANTHER:PTHR14145:SF2 | InterPro:Rpn7/CSN1 |
| SMART:SM00088 | SMART:SM00753 | SUPFAM:SSF46785 | UniParc:UPI0002338356 | InterPro:WH_DNA-bd_sf | SEG:seg |
Description
hypothetical protein
Coordinates
chr7:-:7026416..7032010
Molecular Weight (calculated)
50637.2 Da
IEP (calculated)
6.401
GRAVY (calculated)
-0.418
Length
446 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGDDETSGP MIDEIYANGG GVGDDGDKRS RRAIMSGDQL DIEAYAALYS GRTKIMRLLF FADKMNNAAT QLEALRMAYD EIKKGENTQL FREVVQKIDG
101: RLGPNYDMDA AWCDTVDRRA EQKKEKLENE LNAYRTNLIK ESIRMGFNDF GDFYYAHGQL GDAFKSYVRT RDYCTTSKHI IHMCMSAILV SIEMGQFSHV
201: TSYVSKAEQA PDAPEAVTVA KLRCAAGLAN LEAKKYKLAA RKFLETGPEL GSHYNDVIAS QDVATYGGLC ALATFDRAEL KSKVIDNSNF RNFLELVPEV
301: RELINDFYSS HYASCLEYLG NLKANLLLDI HLHDHVETLY DQIRHKALIQ YTHPFVSVDL NMMANAFKTT VAGLEKELEA LITDNQIQAR IDSHNKILYA
401: RHADQRNATF QRVLETGREF DRDVRSMLLR SNLIKHEFNL RALRKL
101: RLGPNYDMDA AWCDTVDRRA EQKKEKLENE LNAYRTNLIK ESIRMGFNDF GDFYYAHGQL GDAFKSYVRT RDYCTTSKHI IHMCMSAILV SIEMGQFSHV
201: TSYVSKAEQA PDAPEAVTVA KLRCAAGLAN LEAKKYKLAA RKFLETGPEL GSHYNDVIAS QDVATYGGLC ALATFDRAEL KSKVIDNSNF RNFLELVPEV
301: RELINDFYSS HYASCLEYLG NLKANLLLDI HLHDHVETLY DQIRHKALIQ YTHPFVSVDL NMMANAFKTT VAGLEKELEA LITDNQIQAR IDSHNKILYA
401: RHADQRNATF QRVLETGREF DRDVRSMLLR SNLIKHEFNL RALRKL
001: MERDEEASGP MMEMCTNGGE ETSNRRPIIS GEPLDIEAYA ALYKGRTKIM RLLFIANHCG GNHALQFDAL RMAYDEIKKG ENTQLFREVV NKIGNRLGEK
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
101: YGMDLAWCEA VDRRAEQKKV KLENELSSYR TNLIKESIRM GYNDFGDFYY ACGMLGDAFK NYIRTRDYCT TTKHIIHMCM NAILVSIEMG QFTHVTSYVN
201: KAEQNPETLE PMVNAKLRCA SGLAHLELKK YKLAARKFLD VNPELGNSYN EVIAPQDIAT YGGLCALASF DRSELKQKVI DNINFRNFLE LVPDVRELIN
301: DFYSSRYASC LEYLASLKSN LLLDIHLHDH VDTLYDQIRK KALIQYTLPF VSVDLSRMAD AFKTSVSGLE KELEALITDN QIQARIDSHN KILYARHADQ
401: RNATFQKVLQ MGNEFDRDVR AMLLRANLLK HEYHARSARK L
Arabidopsis Description
CSN1SK31 [Source:UniProtKB/TrEMBL;Acc:A0A178VFN7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.