Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH20583 | Soybean | cytosol | 70.82 | 76.83 |
| KRH13242 | Soybean | cytosol | 70.11 | 76.06 |
| Zm00001d023916_P001 | Maize | cytosol | 11.74 | 70.21 |
| Zm00001d020231_P001 | Maize | cytosol | 16.73 | 69.12 |
| VIT_15s0021g01580.t01 | Wine grape | cytosol | 62.28 | 67.57 |
| CDX90073 | Canola | cytosol | 14.59 | 66.13 |
| Solyc01g090290.2.1 | Tomato | cytosol | 59.79 | 64.86 |
| AT1G02090.1 | Thale cress | cytosol | 57.65 | 62.31 |
| CDY38053 | Canola | cytosol | 57.3 | 61.45 |
| Bra032666.1-P | Field mustard | cytoskeleton, cytosol, nucleus | 57.3 | 61.45 |
| CDY00413 | Canola | cytosol | 56.58 | 61.15 |
| CDY01302 | Canola | nucleus | 56.58 | 61.15 |
| Bra012303.1-P | Field mustard | nucleus | 56.23 | 60.77 |
| Os07t0490800-01 | Rice | cytosol, plasma membrane | 25.62 | 59.5 |
| GSMUA_Achr2P12070_001 | Banana | cytosol | 54.8 | 59.0 |
| Bra033219.1-P | Field mustard | cytosol | 19.93 | 58.95 |
| Zm00001d004607_P001 | Maize | nucleus | 33.81 | 57.58 |
| PGSC0003DMT400067022 | Potato | cytosol | 60.5 | 57.43 |
| GSMUA_Achr4P21630_001 | Banana | cytosol | 52.67 | 57.14 |
| TraesCS2A01G228300.1 | Wheat | nucleus | 53.02 | 57.09 |
| TraesCS2B01G253600.2 | Wheat | nucleus | 52.67 | 56.7 |
| KXG36255 | Sorghum | nucleus | 52.67 | 56.7 |
| Zm00001d006410_P013 | Maize | nucleus | 52.67 | 56.7 |
| TraesCS2D01G239100.1 | Wheat | golgi | 52.31 | 56.32 |
| HORVU2Hr1G050230.9 | Barley | nucleus | 52.31 | 56.32 |
| CDY15130 | Canola | extracellular | 21.71 | 54.46 |
| Zm00001d021522_P002 | Maize | cytosol, plasma membrane | 53.02 | 53.6 |
Protein Annotations
| Gene3D:1.25.40.570 | EntrezGene:100816423 | MapMan:19.2.3.3.1.7 | EMBL:ACUP02011499 | EMBL:ACUP02011500 | EnsemblPlantsGene:GLYMA_18G252100 |
| GO:GO:0000338 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006464 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR000717 |
| UniProt:K7MUM9 | EnsemblPlants:KRH01071 | ProteinID:KRH01071 | ProteinID:KRH01071.1 | InterPro:PCI_dom | PFAM:PF01399 |
| PFscan:PS50250 | PANTHER:PTHR15350 | PANTHER:PTHR15350:SF5 | SMART:SM00088 | SMART:SM00753 | UniParc:UPI00029578A8 |
Description
hypothetical protein
Coordinates
chr18:+:53885762..53894767
Molecular Weight (calculated)
32424.9 Da
IEP (calculated)
5.270
GRAVY (calculated)
-0.405
Length
281 amino acids
Sequence
(BLAST)
(BLAST)
001: MDGMVYKENY RGKEESSDER EIETLKMEKK QSEVMEQLVK QASASPNANA LTSILVQATS HPNVFSFSQF LALPNLLQLE ATENSTYLDM LRLFAHGTWS
101: DYKSNADCFP QLIPDQILKL KQLTVLTLAE TYKVLPYNQL MQELDMTNVR ELEDFLISEC MYSGIVRGKL DHLRQCFQVQ FAACRDLRHA QLGSMIQTLS
201: NWLSTSENLL VSIQEKIKWA DAMSEIEKKH RKDVEEKVQE VKSLIKANIN FGGNEDICSE SLSVMDYEDF GRLKRRRKIL F
101: DYKSNADCFP QLIPDQILKL KQLTVLTLAE TYKVLPYNQL MQELDMTNVR ELEDFLISEC MYSGIVRGKL DHLRQCFQVQ FAACRDLRHA QLGSMIQTLS
201: NWLSTSENLL VSIQEKIKWA DAMSEIEKKH RKDVEEKVQE VKSLIKANIN FGGNEDICSE SLSVMDYEDF GRLKRRRKIL F
001: MDIEQKQAEI IDQLVKRAST CKSEALGPLI IEATSHPSLF AFSEILALPN VAQLEGTTDS VYLDLLRLFA HGTWGDYKCN ATRLPHLSPD QILKLKQLTV
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
101: LTLAESNKVL PYDTLMVELD VSNVRELEDF LINECMYAGI VRGKLDQLKR CFEVPFAAGR DLRPGQLGNM LHTLSNWLNT SENLLISIQD KIKWADNMSE
201: MDKKHRKEAE EGVEEVKKSL SMKGDVDIRG NKEMFGEPSG VMDYEEDGIR PKRRRHPVTR
Arabidopsis Description
CSN7COP9 signalosome complex subunit 7 [Source:UniProtKB/Swiss-Prot;Acc:Q94JU3]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.