CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG94317
KRH01071
KRH13242
KRH20583
KRH23810
KRH39972
KRH52586
KRH56376
KRH57651
KRH61926
KRH62556

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	KRH01071	AT1G02090.1	11742986
AT4G26430.1	KRH13242	AT1G02090.1	11742986
AT4G26430.1	KRH20583	AT1G02090.1	11742986
AT4G26430.1	KRH01071	AT1G02090.1	21798944
AT4G26430.1	KRH13242	AT1G02090.1	21798944
AT4G26430.1	KRH20583	AT1G02090.1	21798944
AT4G26430.1	KRH52586	AT1G22920.1	11742986
AT4G26430.1	KRH61926	AT1G22920.1	11742986
AT4G26430.1	KRH52586	AT1G71230.1	11742986
AT4G26430.1	KRH61926	AT1G71230.1	11742986
AT5G56280.1	KRH01071	AT1G02090.1	11701877
AT5G56280.1	KRH13242	AT1G02090.1	11701877
AT5G56280.1	KRH20583	AT1G02090.1	11701877
AT5G56280.1	KRH01071	AT1G02090.1	11742986
AT5G56280.1	KRH13242	AT1G02090.1	11742986
AT5G56280.1	KRH20583	AT1G02090.1	11742986
AT5G56280.1	KRH01071	AT1G02090.1	12615944
AT5G56280.1	KRH13242	AT1G02090.1	12615944
AT5G56280.1	KRH20583	AT1G02090.1	12615944
AT5G56280.1	KRH52586	AT1G22920.1	11701877
AT5G56280.1	KRH61926	AT1G22920.1	11701877
AT5G56280.1	KRH52586	AT1G22920.1	11742986
AT5G56280.1	KRH61926	AT1G22920.1	11742986
AT5G56280.1	KRH52586	AT1G22920.1	12615944
AT5G56280.1	KRH61926	AT1G22920.1	12615944
AT5G56280.1	KRH52586	AT1G22920.1	21798944
AT5G56280.1	KRH61926	AT1G22920.1	21798944
AT5G56280.1	KRH52586	AT1G71230.1	11742986
AT5G56280.1	KRH61926	AT1G71230.1	11742986
AT5G56280.1	KRG94317	AT5G14250.1	11701877
AT5G56280.1	KRH57651	AT5G14250.1	11701877
AT5G56280.1	KRG94317	AT5G14250.1	12615944
AT5G56280.1	KRH57651	AT5G14250.1	12615944
AT5G56280.1	KRH23810	AT5G42970.1	11701877
AT5G56280.1	KRH39972	AT5G42970.1	11701877
AT5G56280.1	KRH23810	AT5G42970.1	12615944
AT5G56280.1	KRH39972	AT5G42970.1	12615944
AT5G56280.1	KRH56376	AT5G56280.1	11742986
AT5G56280.1	KRH62556	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH62556	Soybean	plastid	91.3	92.45
VIT_19s0015g01950.t01	Wine grape	plastid	85.09	86.44
Solyc10g005660.2.1	Tomato	plastid	81.68	84.03
PGSC0003DMT400029338	Potato	plastid	81.06	83.92
GSMUA_Achr5P04140_001	Banana	plastid	77.64	80.91
CDY49389	Canola	plastid	78.88	79.87
AT5G56280.1	Thale cress	plastid	78.57	79.81
CDY32798	Canola	plastid	77.64	79.62
Bra002827.1-P	Field mustard	plastid	77.33	79.3
Bra026439.1-P	Field mustard	plastid	75.47	76.42
CDX89337	Canola	plastid	75.47	76.42
AT4G26430.1	Thale cress	plastid	74.53	75.71
CDX94336	Canola	plastid	74.53	75.47
CDY42737	Canola	plastid	71.74	72.64
Bra019106.1-P	Field mustard	plastid	71.43	72.33
Os08t0500000-01	Rice	plasma membrane	72.98	71.43
EES14305	Sorghum	plastid	72.36	70.18
TraesCS7D01G240300.1	Wheat	golgi, unclear	72.98	69.73
TraesCS7A01G241300.1	Wheat	plastid	72.98	69.73
Zm00001d031323_P001	Maize	extracellular	71.74	69.58
TraesCS7B01G136800.1	Wheat	plastid	72.67	69.44
HORVU7Hr1G049190.1	Barley	plastid	72.67	69.44
Zm00001d052848_P004	Maize	plastid	72.05	68.04
CDX92773	Canola	plastid	68.01	62.22
KRH31118	Soybean	endoplasmic reticulum	22.36	25.0
KRG97767	Soybean	endoplasmic reticulum	22.36	24.91
KRH73154	Soybean	endoplasmic reticulum	22.05	24.57
KRH14986	Soybean	endoplasmic reticulum	21.74	24.22
KRH31114	Soybean	endoplasmic reticulum	21.43	22.33
KRG97770	Soybean	nucleus	21.43	22.33
KRG89488	Soybean	cytosol	13.66	16.42

Protein Annotations

EntrezGene:100786026	MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EMBL:ACUP02004114	EnsemblPlantsGene:GLYMA_06G320400	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0019538	UniProt:I1KFU0	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	EnsemblPlants:KRH56376	ProteinID:KRH56376
ProteinID:KRH56376.1	InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0002339302	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:50904703..50910736

Molecular Weight (calculated)

36032.0 Da

IEP (calculated)

7.058

GRAVY (calculated)

-0.238

Length

322 amino acids

Sequence
(BLAST)

001: MASSSSSGLT FKLHPLVIVN ISDHYTRVKS QMNPTHAPPH TTTNNNNANG GDGVVSPPLH PRVYGCVIGV QKGRTVEIFN SFELLYDPST HSLDRTFLEK
101: KQELYKKVFP HFYILGWYST GSDAEESDMH IHKALMDINE SPVYVLLNPS INHSQKDLPV SIFESELHVI DGIPQLIFVR SSYTIETVEA ERISVDHVAH
201: LKPSDGGSAA TQLAAHLTGT HSAIKMLHSR IKVLHHYLLA MQKGDVPCEN SLLRQVSSLL RRLPAIESGK FQDDFLMEYN DTVLISYLAM LTNCSSSMNE
301: LVDKFNIAYD RHSRRGGRTA FM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.