Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G56280.1 | Thale cress | plastid | 87.38 | 87.38 |
| CDX94336 | Canola | plastid | 86.12 | 85.85 |
| CDY42737 | Canola | plastid | 85.17 | 84.91 |
| Bra019106.1-P | Field mustard | plastid | 85.17 | 84.91 |
| Bra026439.1-P | Field mustard | plastid | 82.33 | 82.08 |
| CDX89337 | Canola | plastid | 82.33 | 82.08 |
| VIT_19s0015g01950.t01 | Wine grape | plastid | 80.13 | 80.13 |
| Solyc10g005660.2.1 | Tomato | plastid | 75.71 | 76.68 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 74.45 | 76.38 |
| KRH62556 | Soybean | plastid | 76.34 | 76.1 |
| KRH56376 | Soybean | plastid | 75.71 | 74.53 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 26.5 | 73.04 |
| CDX92773 | Canola | plastid | 80.13 | 72.16 |
| Os08t0500000-01 | Rice | plasma membrane | 73.82 | 71.12 |
| EES14305 | Sorghum | plastid | 73.19 | 69.88 |
| Zm00001d031323_P001 | Maize | extracellular | 71.92 | 68.67 |
| TraesCS7B01G136800.1 | Wheat | plastid | 72.24 | 67.95 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 72.24 | 67.95 |
| TraesCS7A01G241300.1 | Wheat | plastid | 72.24 | 67.95 |
| Zm00001d052848_P004 | Maize | plastid | 72.87 | 67.74 |
| HORVU7Hr1G049190.1 | Barley | plastid | 71.92 | 67.66 |
| AT5G05780.1 | Thale cress | cytosol | 21.77 | 22.4 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 21.14 | 21.61 |
| AT2G39990.1 | Thale cress | plastid | 19.87 | 21.5 |
Protein Annotations
| MapMan:19.2.3.3.1.6 | Gene3D:3.40.140.10 | EntrezGene:828749 | UniProt:A0A178V1W2 | ProteinID:AEE85198.1 | EMBL:AF395064 |
| EMBL:AF434762 | ArrayExpress:AT4G26430 | EnsemblPlantsGene:AT4G26430 | RefSeq:AT4G26430 | TAIR:AT4G26430 | RefSeq:AT4G26430-TAIR-G |
| EnsemblPlants:AT4G26430.1 | TAIR:AT4G26430.1 | EMBL:AY080638 | EMBL:AY087556 | Unigene:At.75239 | EMBL:BT002345 |
| ProteinID:CAA18227.1 | ProteinID:CAB79498.1 | Symbol:CSN6B | GO:GO:0000338 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005737 |
| GO:GO:0006464 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0008180 | GO:GO:0009585 | GO:GO:0009605 | GO:GO:0009628 | GO:GO:0009987 | GO:GO:0010017 |
| GO:GO:0010387 | GO:GO:0016043 | GO:GO:0019538 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | InterPro:MPN |
| InterPro:MPN_CSN6 | RefSeq:NP_567746.1 | ProteinID:OAP00350.1 | PFAM:PF01398 | PFAM:PF13012 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PFscan:PS50249 | PANTHER:PTHR10540 |
| PANTHER:PTHR10540:SF8 | UniProt:Q8W1P0 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI00000AC3B4 | SEG:seg |
Description
CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
Coordinates
chr4:+:13354992..13357629
Molecular Weight (calculated)
35406.4 Da
IEP (calculated)
6.703
GRAVY (calculated)
-0.190
Length
317 amino acids
Sequence
(BLAST)
(BLAST)
001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.