Factsheet for PGSC0003DMT400056930

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 3
mitochondrion 2
cytosol 2
nucleus 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400013225
PGSC0003DMT400023896
PGSC0003DMT400052100
PGSC0003DMT400056930
PGSC0003DMT400067022
PGSC0003DMT400069203

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	PGSC0003DMT400067022	AT1G02090.1	11742986
AT4G26430.1	PGSC0003DMT400067022	AT1G02090.1	21798944
AT4G26430.1	PGSC0003DMT400023896	AT1G22920.1	11742986
AT4G26430.1	PGSC0003DMT400069203	AT1G22920.1	11742986
AT4G26430.1	PGSC0003DMT400023896	AT1G71230.1	11742986
AT4G26430.1	PGSC0003DMT400069203	AT1G71230.1	11742986
AT5G56280.1	PGSC0003DMT400067022	AT1G02090.1	11701877
AT5G56280.1	PGSC0003DMT400067022	AT1G02090.1	11742986
AT5G56280.1	PGSC0003DMT400067022	AT1G02090.1	12615944
AT5G56280.1	PGSC0003DMT400023896	AT1G22920.1	11701877
AT5G56280.1	PGSC0003DMT400069203	AT1G22920.1	11701877
AT5G56280.1	PGSC0003DMT400023896	AT1G22920.1	11742986
AT5G56280.1	PGSC0003DMT400069203	AT1G22920.1	11742986
AT5G56280.1	PGSC0003DMT400023896	AT1G22920.1	12615944
AT5G56280.1	PGSC0003DMT400069203	AT1G22920.1	12615944
AT5G56280.1	PGSC0003DMT400023896	AT1G22920.1	21798944
AT5G56280.1	PGSC0003DMT400069203	AT1G22920.1	21798944
AT5G56280.1	PGSC0003DMT400023896	AT1G71230.1	11742986
AT5G56280.1	PGSC0003DMT400069203	AT1G71230.1	11742986
AT5G56280.1	PGSC0003DMT400052100	AT5G14250.1	11701877
AT5G56280.1	PGSC0003DMT400052100	AT5G14250.1	12615944
AT5G56280.1	PGSC0003DMT400013225	AT5G42970.1	11701877
AT5G56280.1	PGSC0003DMT400013225	AT5G42970.1	12615944
AT5G56280.1	PGSC0003DMT400056930	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400029338	Potato	plastid	83.48	30.87
GSMUA_Achr5P04140_001	Banana	plastid	77.39	28.8
CDY49389	Canola	plastid	75.65	27.36
AT5G56280.1	Thale cress	plastid	74.78	27.13
CDY32798	Canola	plastid	73.91	27.07
Bra002827.1-P	Field mustard	plastid	73.91	27.07
AT4G26430.1	Thale cress	plastid	73.04	26.5
CDX89337	Canola	plastid	72.17	26.1
Bra026439.1-P	Field mustard	plastid	72.17	26.1
CDY42737	Canola	plastid	72.17	26.1
Os08t0500000-01	Rice	plasma membrane	73.91	25.84
Bra019106.1-P	Field mustard	plastid	71.3	25.79
CDX94336	Canola	plastid	71.3	25.79
EES14305	Sorghum	plastid	73.04	25.3
TraesCS7A01G241300.1	Wheat	plastid	73.04	24.93
TraesCS7B01G136800.1	Wheat	plastid	73.04	24.93
TraesCS7D01G240300.1	Wheat	golgi, unclear	73.04	24.93
HORVU7Hr1G049190.1	Barley	plastid	72.17	24.63
Zm00001d031323_P001	Maize	extracellular	70.43	24.4
Zm00001d052848_P004	Maize	plastid	72.17	24.34
CDX92773	Canola	plastid	72.17	23.58
PGSC0003DMT400069899	Potato	cytosol	25.22	10.18
PGSC0003DMT400042160	Potato	cytosol	22.61	8.39
PGSC0003DMT400071416	Potato	cytosol	20.87	8.3

Protein Annotations

Gene3D:3.40.140.10	MapMan:35.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:JAMM/MPN+_dom	UniProt:M1C035
InterPro:MPN_CSN6	PFAM:PF01398	EnsemblPlantsGene:PGSC0003DMG400022138	PGSC:PGSC0003DMG400022138	EnsemblPlants:PGSC0003DMT400056930	PANTHER:PTHR10540
PANTHER:PTHR10540:SF8	UniParc:UPI000294E6D1	:	:	:	:

Description

COP9 signalosome complex subunit 6b [Source:PGSC_GENE;Acc:PGSC0003DMG400022138]

Coordinates

chr7:-:56296551..56299140

Molecular Weight (calculated)

13123.6 Da

IEP (calculated)

5.594

GRAVY (calculated)

-0.065

Length

115 amino acids

Sequence
(BLAST)

001: MASSSSSGLT FKLHPRITTL VVFDCVIGVQ SGRTVEIFNN FELLYDPATH SLDRAFLEKK QELYKKVFPN FYVLGWYSSG SDAQESDMLI HKAEYNDTLL
101: VSYLAMFTNC SRYDV

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.