Factsheet for GSMUA_Achr5P04140_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr11P...
GSMUA_Achr2P12070_001
GSMUA_Achr4P21630_001
GSMUA_Achr5P04140_001
GSMUA_Achr8P31220_001
GSMUA_Achr9P19410_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	GSMUA_Achr2P12070_001	AT1G02090.1	11742986
AT4G26430.1	GSMUA_Achr4P21630_001	AT1G02090.1	11742986
AT4G26430.1	GSMUA_Achr2P12070_001	AT1G02090.1	21798944
AT4G26430.1	GSMUA_Achr4P21630_001	AT1G02090.1	21798944
AT4G26430.1	GSMUA_Achr10P...	AT1G22920.1	11742986
AT4G26430.1	GSMUA_Achr10P...	AT1G71230.1	11742986
AT5G56280.1	GSMUA_Achr2P12070_001	AT1G02090.1	11701877
AT5G56280.1	GSMUA_Achr4P21630_001	AT1G02090.1	11701877
AT5G56280.1	GSMUA_Achr2P12070_001	AT1G02090.1	11742986
AT5G56280.1	GSMUA_Achr4P21630_001	AT1G02090.1	11742986
AT5G56280.1	GSMUA_Achr2P12070_001	AT1G02090.1	12615944
AT5G56280.1	GSMUA_Achr4P21630_001	AT1G02090.1	12615944
AT5G56280.1	GSMUA_Achr10P...	AT1G22920.1	11701877
AT5G56280.1	GSMUA_Achr10P...	AT1G22920.1	11742986
AT5G56280.1	GSMUA_Achr10P...	AT1G22920.1	12615944
AT5G56280.1	GSMUA_Achr10P...	AT1G22920.1	21798944
AT5G56280.1	GSMUA_Achr10P...	AT1G71230.1	11742986
AT5G56280.1	GSMUA_Achr11P...	AT5G14250.1	11701877
AT5G56280.1	GSMUA_AchrUn_...	AT5G14250.1	11701877
AT5G56280.1	GSMUA_Achr11P...	AT5G14250.1	12615944
AT5G56280.1	GSMUA_AchrUn_...	AT5G14250.1	12615944
AT5G56280.1	GSMUA_Achr8P31220_001	AT5G42970.1	11701877
AT5G56280.1	GSMUA_Achr9P19410_001	AT5G42970.1	11701877
AT5G56280.1	GSMUA_Achr8P31220_001	AT5G42970.1	12615944
AT5G56280.1	GSMUA_Achr9P19410_001	AT5G42970.1	12615944
AT5G56280.1	GSMUA_Achr5P04140_001	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_19s0015g01950.t01	Wine grape	plastid	85.76	83.6
PGSC0003DMT400029338	Potato	plastid	81.88	81.35
Solyc10g005660.2.1	Tomato	plastid	82.2	81.15
KRH62556	Soybean	plastid	80.91	78.62
CDY32798	Canola	plastid	79.61	78.34
AT5G56280.1	Thale cress	plastid	79.94	77.92
Bra002827.1-P	Field mustard	plastid	78.96	77.71
CDY49389	Canola	plastid	79.94	77.67
KRH56376	Soybean	plastid	80.91	77.64
PGSC0003DMT400056930	Potato	cytosol, plastid	28.8	77.39
CDX94336	Canola	plastid	77.35	75.16
CDX89337	Canola	plastid	77.35	75.16
Bra026439.1-P	Field mustard	plastid	77.35	75.16
Os08t0500000-01	Rice	plasma membrane	79.61	74.77
AT4G26430.1	Thale cress	plastid	76.38	74.45
EES14305	Sorghum	plastid	78.64	73.19
Zm00001d031323_P001	Maize	extracellular	77.99	72.59
CDY42737	Canola	plastid	74.43	72.33
TraesCS7D01G240300.1	Wheat	golgi, unclear	78.64	72.11
TraesCS7A01G241300.1	Wheat	plastid	78.64	72.11
Bra019106.1-P	Field mustard	plastid	74.11	72.01
HORVU7Hr1G049190.1	Barley	plastid	78.32	71.81
TraesCS7B01G136800.1	Wheat	plastid	77.67	71.22
Zm00001d052848_P004	Maize	plastid	77.99	70.67
CDX92773	Canola	plastid	70.87	62.22
GSMUA_Achr2P16060_001	Banana	cytosol	10.68	26.83
GSMUA_Achr9P25620_001	Banana	cytosol	22.33	22.19
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	21.04	22.18
GSMUA_Achr9P28480_001	Banana	cytosol	20.71	21.84
GSMUA_Achr8P20510_001	Banana	cytosol	21.68	21.61
GSMUA_Achr2P16050_001	Banana	cytosol	7.77	20.69

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr5G04140_001	EnsemblPlants:GSMUA_Achr5P04140_001
EnsemblPlants:GSMUA_Achr5T04140_001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M0SVJ3	InterPro:MPN	InterPro:MPN_CSN6
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI000295BEA7	SEG:seg	:	:	:

Description

COP9 signalosome complex subunit 6a [Source:GMGC_GENE;Acc:GSMUA_Achr5G04140_001]

Coordinates

chr5:+:2965378..2971860

Molecular Weight (calculated)

34577.4 Da

IEP (calculated)

6.849

GRAVY (calculated)

-0.121

Length

309 amino acids

Sequence
(BLAST)

001: MASSSSGSGL TFKLHPLVIV NISDHHTRVR AQIQHSASAA PLAEGGGGRV FGCVIGVQRG RTVEIFNSFE LLYDPLTHSL DRSFLEKKQE LYKKVFPNFY
101: ILGWYSTGSE AQESDLQIHK ALMDINESPV YVLLNPLINH AQKDLPVTIY ESELHIIDGI PQLIFVRSNY TIETVEAERI SVDHVAHLKP SDGGSAATQL
201: AAHLTGIHSA IKMLNSRIRV VHQYLVAMQK GDIPLDNSFL RQVSSLLRRL PAMESEKFQD DFLMEYNDTL LVAYLAMLTN CSSTLNELVD KFNTTYDRNS
301: RRGGRTAFI

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.