Factsheet for GSMUA_Achr2P16050_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28480_001	Banana	cytosol	76.72	30.38
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	71.55	28.33
Os05t0104800-01	Rice	nucleus	63.79	26.06
PGSC0003DMT400069899	Potato	cytosol	61.21	24.91
Solyc05g052690.2.1	Tomato	cytosol	61.21	24.91
Solyc11g013440.1.1	Tomato	plastid	61.21	24.91
KXG22419	Sorghum	plastid	61.21	24.74
Zm00001d011100_P002	Maize	plastid	61.21	24.74
VIT_13s0019g03470.t01	Wine grape	cytosol	60.34	24.56
CDX74814	Canola	cytosol, plastid	60.34	24.22
KRG97767	Soybean	endoplasmic reticulum	60.34	24.22
TraesCS6D01G078000.1	Wheat	plastid	60.34	23.97
TraesCS6A01G090300.1	Wheat	golgi	60.34	23.97
TraesCS6B01G112400.2	Wheat	plastid	60.34	23.97
Zm00001d035752_P002	Maize	plastid	62.93	23.93
Bra004995.1-P	Field mustard	plastid	60.34	23.89
AT2G39990.1	Thale cress	plastid	60.34	23.89
CDY65775	Canola	cytosol, plastid	59.48	23.88
KRH31118	Soybean	endoplasmic reticulum	58.62	23.61
CDY24934	Canola	plastid	59.48	23.55
Bra000157.1-P	Field mustard	plastid	58.62	23.21
CDY60991	Canola	plastid	58.62	23.21
KRH73154	Soybean	endoplasmic reticulum	56.9	22.84
KRH14986	Soybean	endoplasmic reticulum	56.9	22.84
HORVU6Hr1G014610.1	Barley	plastid	60.34	22.51
PGSC0003DMT400071416	Potato	cytosol	43.1	17.3
GSMUA_Achr8P20510_001	Banana	cytosol	22.41	8.39
GSMUA_Achr9P25620_001	Banana	cytosol	22.41	8.36
GSMUA_Achr5P04140_001	Banana	plastid	20.69	7.77
GSMUA_Achr2P16060_001	Banana	cytosol	2.59	2.44

Protein Annotations

MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412
GO:GO:0006413	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSMUA_Achr2G16050_001	EnsemblPlants:GSMUA_Achr2P16050_001	EnsemblPlants:GSMUA_Achr2T16050_001	UniProt:M0S8E6	PFAM:PF13012
PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	UniParc:UPI000296B6BC	InterPro:eIF3f	SEG:seg

Description

Eukaryotic translation initiation factor 3 subunit F [Source:GMGC_GENE;Acc:GSMUA_Achr2G16050_001]

Coordinates

chr2:-:17108715..17110211

Molecular Weight (calculated)

13106.8 Da

IEP (calculated)

4.301

GRAVY (calculated)

0.064

Length

116 amino acids

Sequence
(BLAST)

001: MIEAERVGSD VLKTTVTDKL PNDLEGMEAS TKRLYSLIDD IYKYVDDVVE GRAAPDNDIG RFLANELASV LKFLQMIFDN VFNKIIQDNF ALFYLSSLIR
101: TQLSIVEKLN TAAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.