Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS6A01G090300.1 | Wheat | golgi | 99.32 | 99.32 |
| TraesCS6B01G112400.2 | Wheat | plastid | 98.97 | 98.97 |
| HORVU6Hr1G014610.1 | Barley | plastid | 91.44 | 85.85 |
| KXG22419 | Sorghum | plastid | 82.88 | 84.32 |
| Os05t0104800-01 | Rice | nucleus | 81.85 | 84.15 |
| Zm00001d011100_P002 | Maize | plastid | 81.51 | 82.93 |
| Zm00001d035752_P002 | Maize | plastid | 80.48 | 77.05 |
| Solyc05g052690.2.1 | Tomato | cytosol | 68.49 | 70.18 |
| PGSC0003DMT400069899 | Potato | cytosol | 68.49 | 70.18 |
| KRG97767 | Soybean | endoplasmic reticulum | 69.18 | 69.9 |
| VIT_13s0019g03470.t01 | Wine grape | cytosol | 68.15 | 69.82 |
| KRH31118 | Soybean | endoplasmic reticulum | 68.49 | 69.44 |
| GSMUA_Achr9P28480_001 | Banana | cytosol | 69.52 | 69.28 |
| KRH73154 | Soybean | endoplasmic reticulum | 68.15 | 68.86 |
| Solyc11g013440.1.1 | Tomato | plastid | 66.78 | 68.42 |
| KRH14986 | Soybean | endoplasmic reticulum | 67.47 | 68.17 |
| GSMUA_Achr6P05250_001 | Banana | cytosol, plastid | 67.81 | 67.58 |
| CDX74814 | Canola | cytosol, plastid | 65.07 | 65.74 |
| AT2G39990.1 | Thale cress | plastid | 64.38 | 64.16 |
| Bra004995.1-P | Field mustard | plastid | 64.38 | 64.16 |
| CDY24934 | Canola | plastid | 64.04 | 63.82 |
| Bra000157.1-P | Field mustard | plastid | 64.04 | 63.82 |
| CDY65775 | Canola | cytosol, plastid | 63.01 | 63.67 |
| CDY60991 | Canola | plastid | 63.7 | 63.48 |
| GSMUA_Achr2P16060_001 | Banana | cytosol | 25.68 | 60.98 |
| GSMUA_Achr2P16050_001 | Banana | cytosol | 23.97 | 60.34 |
| PGSC0003DMT400071416 | Potato | cytosol | 58.9 | 59.52 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 24.32 | 22.9 |
| TraesCS7D01G240300.1 | Wheat | golgi, unclear | 19.52 | 16.91 |
| TraesCS1D01G370500.1 | Wheat | cytosol | 6.51 | 4.14 |
Protein Annotations
| MapMan:17.4.1.3.6 | Gene3D:3.40.140.10 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003743 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005852 | GO:GO:0006412 | GO:GO:0007275 |
| GO:GO:0008135 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009744 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009793 | GO:GO:0009846 | GO:GO:0009856 | GO:GO:0009987 | GO:GO:0016020 |
| GO:GO:0019538 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | HAMAP:MF_03005 | InterPro:MPN | PFAM:PF01398 |
| PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF6 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 |
| EnsemblPlantsGene:TraesCS6D01G078000 | EnsemblPlants:TraesCS6D01G078000.1 | TIGR:cd08064 | InterPro:eIF3f | SEG:seg | : |
Description
No Description!
Coordinates
chr6D:-:42564339..42566808
Molecular Weight (calculated)
31839.9 Da
IEP (calculated)
4.791
GRAVY (calculated)
-0.013
Length
292 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAPETSTCG AGPALLFPSS SSSSSSARVE AVVVFTICDS FVRRPDQAER VIGTLLGSVL PDGTVHVRNA YVVPHSESAD QVALDIEYHH NMYASHQKVN
101: PKEVLVGWFS TGFGVSGGST LIHEFYSREV QSPIHLTVDT GFTMGEASIK AYVSSNLSLG DRHLAAQFQE IPLDLKMLDA EKVGFEMLKS TMVEKLPNDL
201: EGMESSMQNL YALIDEIYKY VDDVVEARVA PDNKIGRFIA DTVSSMPKLS PASFDRLFND KIQDNLALVY LSSITRTQIA VAEKLNTAAQ VL
101: PKEVLVGWFS TGFGVSGGST LIHEFYSREV QSPIHLTVDT GFTMGEASIK AYVSSNLSLG DRHLAAQFQE IPLDLKMLDA EKVGFEMLKS TMVEKLPNDL
201: EGMESSMQNL YALIDEIYKY VDDVVEARVA PDNKIGRFIA DTVSSMPKLS PASFDRLFND KIQDNLALVY LSSITRTQIA VAEKLNTAAQ VL
001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML
Arabidopsis Description
TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.