CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY65775	Canola	cytosol, plastid	92.39	92.39
Bra004995.1-P	Field mustard	plastid	93.43	92.15
CDY24934	Canola	plastid	88.24	87.03
CDY60991	Canola	plastid	87.89	86.69
AT2G39990.1	Thale cress	plastid	85.81	84.64
VIT_13s0019g03470.t01	Wine grape	cytosol	75.43	76.49
KRG97767	Soybean	endoplasmic reticulum	76.47	76.47
KRH31118	Soybean	endoplasmic reticulum	74.74	75.0
KRH14986	Soybean	endoplasmic reticulum	73.01	73.01
KRH73154	Soybean	endoplasmic reticulum	72.66	72.66
PGSC0003DMT400069899	Potato	cytosol	71.28	72.28
Solyc05g052690.2.1	Tomato	cytosol	70.93	71.93
Solyc11g013440.1.1	Tomato	plastid	69.9	70.88
Os05t0104800-01	Rice	nucleus	67.13	68.31
KXG22419	Sorghum	plastid	66.44	66.9
Zm00001d011100_P002	Maize	plastid	66.09	66.55
TraesCS6A01G090300.1	Wheat	golgi	66.09	65.41
TraesCS6D01G078000.1	Wheat	plastid	65.74	65.07
TraesCS6B01G112400.2	Wheat	plastid	65.74	65.07
GSMUA_Achr9P28480_001	Banana	cytosol	64.36	63.48
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	64.01	63.14
Zm00001d035752_P002	Maize	plastid	65.05	61.64
PGSC0003DMT400071416	Potato	cytosol	61.25	61.25
GSMUA_Achr2P16060_001	Banana	cytosol	25.95	60.98
GSMUA_Achr2P16050_001	Banana	cytosol	24.22	60.34
HORVU6Hr1G014610.1	Barley	plastid	64.01	59.49
CDY04967	Canola	cytosol	25.61	24.03
CDY14102	Canola	cytosol	25.61	24.03
CDY11340	Canola	extracellular	25.26	23.7
CDX70129	Canola	cytosol, nucleus, vacuole	25.26	23.7
CDX80973	Canola	cytosol, nucleus, vacuole	25.26	23.7
CDX98863	Canola	cytosol	24.91	23.38
CDY17426	Canola	cytosol, nucleus, plastid	21.8	22.99
CDY04139	Canola	cytosol	22.15	22.7
CDX94336	Canola	plastid	24.91	22.64
CDY42737	Canola	plastid	24.57	22.33
CDX89337	Canola	plastid	24.57	22.33
CDY32798	Canola	plastid	23.53	21.66
CDY49389	Canola	plastid	23.53	21.38
CDY06213	Canola	cytosol	12.46	20.57
CDX92773	Canola	plastid	23.88	19.6
CDX70711	Canola	cytosol	6.57	14.96
CDX78706	Canola	cytosol	19.72	14.5

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:A0A078CF94	EnsemblPlants:CDX74814	ProteinID:CDX74814	ProteinID:CDX74814.1
GO:GO:0001731	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852
GO:GO:0006412	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00116788001	InterPro:IPR037518
InterPro:JAMM/MPN+_dom	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0004EDDA3D	InterPro:eIF3f
SEG:seg	:	:	:	:	:

Description

BnaA05g05600D

Coordinates

chrLK031802:+:775485..777015

Molecular Weight (calculated)

31605.7 Da

IEP (calculated)

4.594

GRAVY (calculated)

0.016

Length

289 amino acids

Sequence
(BLAST)

001: MAAANEHTVL QFATPSSTTS ILTARIHPLV IFNVCDCFVR RPDSAERVIG TLLGSILPDG TVDIRNSYAV PHNESSDQVA VDIDYHHNML ASHLKVNPKE
101: IIVGWYSTGL GVNGGSALIH DFYAREVTNP IHLTVDTGFT NGEGAIKAFV SSNLSLGDRQ LAAQFQEVPV DLRMVEAERV GYDVLKATAV DKLPNDMEGM
201: ELTMERLLSL INDVYKYVDS VVEGQTPPDN NIGRFIAEAV ASLPKLPPQV FDNLVNDSLQ DQLLLLYLSS ITRTQLSLAE KLNTAAQML

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.