Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | CDX83563 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY04184 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY13593 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY39183 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra032422.1-P | Field mustard | cytosol, nucleus, plastid | 62.86 | 36.79 |
| Os04t0661900-01 | Rice | cytosol | 32.0 | 32.94 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 16.57 | 30.85 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 38.86 | 24.82 |
| CDY04139 | Canola | cytosol | 37.14 | 23.05 |
| VIT_07s0005g03000.t01 | Wine grape | nucleus | 12.57 | 22.68 |
| VIT_03s0017g00150.t01 | Wine grape | nucleus | 12.0 | 21.65 |
| CDY11340 | Canola | extracellular | 34.86 | 19.81 |
| CDY14102 | Canola | cytosol | 34.86 | 19.81 |
| CDY04967 | Canola | cytosol | 34.86 | 19.81 |
| AT5G05780.1 | Thale cress | cytosol | 34.86 | 19.81 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 34.86 | 19.81 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 34.86 | 19.81 |
| KRG97770 | Soybean | nucleus | 34.86 | 19.74 |
| KRH31114 | Soybean | endoplasmic reticulum | 34.86 | 19.74 |
| CDX98863 | Canola | cytosol | 34.29 | 19.48 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 34.29 | 19.35 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 34.29 | 19.35 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 34.29 | 19.35 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 34.29 | 19.35 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 34.29 | 19.35 |
| EES11600 | Sorghum | cytosol | 33.71 | 19.03 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 33.14 | 18.71 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 33.14 | 18.65 |
| Zm00001d001966_P001 | Maize | cytosol | 33.71 | 18.5 |
| Solyc01g008370.2.1 | Tomato | nucleus | 32.57 | 18.39 |
| PGSC0003DMT400042160 | Potato | cytosol | 32.57 | 18.39 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 33.71 | 17.82 |
| CDX78706 | Canola | cytosol | 30.29 | 13.49 |
| CDY60991 | Canola | plastid | 22.29 | 13.31 |
| CDY24934 | Canola | plastid | 22.29 | 13.31 |
| CDY65775 | Canola | cytosol, plastid | 20.57 | 12.46 |
| CDX74814 | Canola | cytosol, plastid | 20.57 | 12.46 |
| CDX70711 | Canola | cytosol | 8.57 | 11.81 |
| CDY32798 | Canola | plastid | 20.57 | 11.46 |
| CDY49389 | Canola | plastid | 20.0 | 11.01 |
| CDX94336 | Canola | plastid | 20.0 | 11.01 |
| CDX89337 | Canola | plastid | 20.0 | 11.01 |
| CDY42737 | Canola | plastid | 19.43 | 10.69 |
| CDX92773 | Canola | plastid | 20.0 | 9.94 |
| KRG89488 | Soybean | cytosol | 11.43 | 7.46 |
Protein Annotations
| Gene3D:3.40.140.10 | MapMan:35.1 | EnsemblPlants:CDY06213 | ProteinID:CDY06213 | ProteinID:CDY06213.1 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005838 |
| EnsemblPlantsGene:GSBRNA2T00122122001 | InterPro:JAMM/MPN+_dom | InterPro:MPN_RPN7_8 | PFAM:PF01398 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 |
| UniParc:UPI0004EF469B | SEG:seg | : | : | : | : |
Description
BnaA09g49900D
Coordinates
chrLK031968:-:296761..297660
Molecular Weight (calculated)
19623.6 Da
IEP (calculated)
7.724
GRAVY (calculated)
-0.170
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MTIEKVVVHP LVLRNIFHKH HCVVKNTGRR GVGVLLGWRH GGIVSVTNSY AVLFKEDSVW SFDQTHHESM LRMFESVSER DVVVGWYSTS PEPHVNNLDM
101: HAVFRKHPDT NAISNKCSTV TLRGEFAEEK ALALNGTDVE GWTVTVKVLP PAMTELMSGK SPRELALEYV AARNC
101: HAVFRKHPDT NAISNKCSTV TLRGEFAEEK ALALNGTDVE GWTVTVKVLP PAMTELMSGK SPRELALEYV AARNC
001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
Arabidopsis Description
RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.