Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr3P07350_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | GSMUA_Achr3P07350_001 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr8P20510_001 | Banana | cytosol | 96.78 | 97.1 |
| VIT_08s0007g01980.t01 | Wine grape | cytosol | 92.28 | 92.58 |
| EES11600 | Sorghum | cytosol | 91.64 | 91.94 |
| KRH31114 | Soybean | endoplasmic reticulum | 90.35 | 90.94 |
| Solyc01g008370.2.1 | Tomato | nucleus | 90.03 | 90.32 |
| VIT_02s0025g01490.t01 | Wine grape | cytosol | 90.03 | 90.32 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 89.71 | 90.0 |
| PGSC0003DMT400042160 | Potato | cytosol | 89.39 | 89.68 |
| KRG97770 | Soybean | nucleus | 89.07 | 89.64 |
| CDY11340 | Canola | extracellular | 88.75 | 89.61 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 89.07 | 89.35 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 89.07 | 89.35 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 89.07 | 89.35 |
| Zm00001d001966_P001 | Maize | cytosol | 91.64 | 89.34 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 88.42 | 89.29 |
| Bra005867.1-P | Field mustard | cytosol, nucleus, vacuole | 88.42 | 89.29 |
| AT5G05780.1 | Thale cress | cytosol | 88.1 | 88.96 |
| CDY14102 | Canola | cytosol | 88.1 | 88.96 |
| CDY04967 | Canola | cytosol | 88.1 | 88.96 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 88.1 | 88.96 |
| Bra028748.1-P | Field mustard | cytosol, nucleus, plastid | 87.78 | 88.64 |
| Bra009133.1-P | Field mustard | cytosol | 87.78 | 88.64 |
| CDX98863 | Canola | cytosol | 87.46 | 88.31 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 87.78 | 88.06 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 85.85 | 80.66 |
| Os04t0661900-01 | Rice | cytosol | 43.73 | 80.0 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 18.97 | 62.77 |
| KRG89488 | Soybean | cytosol | 42.12 | 48.88 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 37.94 | 43.07 |
| CDY04139 | Canola | cytosol | 38.59 | 42.55 |
| Bra017408.1-P | Field mustard | cytosol | 39.87 | 40.26 |
| CDX70711 | Canola | cytosol | 16.08 | 39.37 |
| GSMUA_Achr2P16060_001 | Banana | cytosol | 13.18 | 33.33 |
| CDY06213 | Canola | cytosol | 18.65 | 33.14 |
| Bra032422.1-P | Field mustard | cytosol, nucleus, plastid | 29.9 | 31.1 |
| CDX78706 | Canola | cytosol | 34.08 | 26.97 |
| GSMUA_Achr9P28480_001 | Banana | cytosol | 25.08 | 26.62 |
| GSMUA_Achr6P05250_001 | Banana | cytosol, plastid | 25.08 | 26.62 |
| Bra006369.1-P | Field mustard | cytosol | 34.08 | 26.43 |
| GSMUA_Achr2P16050_001 | Banana | cytosol | 8.36 | 22.41 |
| GSMUA_Achr5P04140_001 | Banana | plastid | 22.19 | 22.33 |
Protein Annotations
| MapMan:19.2.6.2.2.7 | Gene3D:3.40.140.10 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005838 | EnsemblPlantsGene:GSMUA_Achr9G25620_001 | EnsemblPlants:GSMUA_Achr9P25620_001 | EnsemblPlants:GSMUA_Achr9T25620_001 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | UniProt:M0U3G9 | InterPro:MPN | InterPro:MPN_RPN7_8 | PFAM:PF01398 |
| PFAM:PF13012 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 |
| UniParc:UPI000294F0D2 | : | : | : | : | : |
Description
Probable 26S proteasome non-ATPase regulatory subunit 7 [Source:GMGC_GENE;Acc:GSMUA_Achr9G25620_001]
Coordinates
chr9:+:30150247..30157127
Molecular Weight (calculated)
34965.2 Da
IEP (calculated)
6.380
GRAVY (calculated)
-0.118
Length
311 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVVKVQQMS GRAVEKVIVH PLVLLSIVDN YNRVARDTRK RVIGVLLGSS AKGTVDVTNS YAVPFEEDEK DPSIWFLDHN YHESMFSMFK RINAKEHVVG
101: WYSTGPKLRE NDLDIHALFN DYVPNSVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLSALKGLD ARLREIRSYL DLVIDGKLPL NHEILYHLQD IFNLLPNLNV NELIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDSK
301: PTTAIPSAAG S
101: WYSTGPKLRE NDLDIHALFN DYVPNSVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLSALKGLD ARLREIRSYL DLVIDGKLPL NHEILYHLQD IFNLLPNLNV NELIKAFAVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDSK
301: PTTAIPSAAG S
001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
Arabidopsis Description
RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.