Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 95.45 | 94.84 |
| EES11600 | Sorghum | cytosol | 91.23 | 90.65 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 90.58 | 90.0 |
| KRH31114 | Soybean | endoplasmic reticulum | 89.94 | 89.64 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 89.94 | 89.35 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 89.94 | 89.35 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 89.94 | 89.35 |
| KRG97770 | Soybean | nucleus | 89.29 | 89.0 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 88.96 | 88.1 |
| Zm00001d001966_P001 | Maize | cytosol | 91.23 | 88.09 |
| Solyc01g008370.2.1 | Tomato | nucleus | 87.99 | 87.42 |
| PGSC0003DMT400042160 | Potato | cytosol | 87.99 | 87.42 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 87.66 | 87.1 |
| Os04t0661900-01 | Rice | cytosol | 44.48 | 80.59 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 86.36 | 80.36 |
| VIT_07s0005g03000.t01 | Wine grape | nucleus | 21.75 | 69.07 |
| VIT_03s0017g00150.t01 | Wine grape | nucleus | 21.1 | 67.01 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 19.48 | 63.83 |
| KRG89488 | Soybean | cytosol | 42.53 | 48.88 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 41.56 | 46.72 |
| CDY04139 | Canola | cytosol | 42.53 | 46.45 |
| Bra017408.1-P | Field mustard | cytosol | 43.83 | 43.83 |
| CDX70711 | Canola | cytosol | 17.21 | 41.73 |
| CDY06213 | Canola | cytosol | 19.81 | 34.86 |
| Bra032422.1-P | Field mustard | cytosol, nucleus, plastid | 31.82 | 32.78 |
| Bra006369.1-P | Field mustard | cytosol | 39.29 | 30.17 |
| CDX78706 | Canola | cytosol | 38.31 | 30.03 |
| AT2G39990.1 | Thale cress | plastid | 22.4 | 23.55 |
| AT4G26430.1 | Thale cress | plastid | 22.4 | 21.77 |
| AT5G56280.1 | Thale cress | plastid | 21.1 | 20.5 |
Protein Annotations
| MapMan:19.2.6.2.2.7 | Gene3D:3.40.140.10 | EntrezGene:830463 | ProteinID:AED90923.1 | EMBL:AF378878 | ArrayExpress:AT5G05780 |
| EnsemblPlantsGene:AT5G05780 | RefSeq:AT5G05780 | TAIR:AT5G05780 | RefSeq:AT5G05780-TAIR-G | EnsemblPlants:AT5G05780.1 | TAIR:AT5G05780.1 |
| EMBL:AY087393 | EMBL:AY230839 | EMBL:AY230840 | Unigene:At.20537 | ProteinID:BAB09672.1 | EMBL:BT002610 |
| GO:GO:0000502 | GO:GO:0002376 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005838 | GO:GO:0006950 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009056 | GO:GO:0009653 | GO:GO:0009965 |
| GO:GO:0009987 | GO:GO:0019538 | GO:GO:0043161 | GO:GO:0045087 | InterPro:IPR037518 | InterPro:JAMM/MPN+_dom |
| MEROPS:M67.973 | InterPro:MPN | InterPro:MPN_RPN7_8 | RefSeq:NP_196197.1 | UniProt:O24412 | PFAM:PF01398 |
| PFAM:PF13012 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50249 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 | Symbol:RPN8A | InterPro:Rpn11/EIF3F_C |
| SMART:SM00232 | EMBL:U54560 | UniParc:UPI0000000AC8 | SEG:seg | : | : |
Description
RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
Coordinates
chr5:+:1735730..1738740
Molecular Weight (calculated)
34729.9 Da
IEP (calculated)
6.515
GRAVY (calculated)
-0.091
Length
308 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.