Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400033754 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | PGSC0003DMT400033754 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g008370.2.1 | Tomato | nucleus | 99.35 | 99.35 |
| VIT_08s0007g01980.t01 | Wine grape | cytosol | 92.58 | 92.58 |
| KRH31114 | Soybean | endoplasmic reticulum | 90.65 | 90.94 |
| VIT_02s0025g01490.t01 | Wine grape | cytosol | 90.65 | 90.65 |
| KRG97770 | Soybean | nucleus | 89.68 | 89.97 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 89.68 | 89.39 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 89.35 | 89.35 |
| EES11600 | Sorghum | cytosol | 89.03 | 89.03 |
| CDY11340 | Canola | extracellular | 88.06 | 88.64 |
| Bra005867.1-P | Field mustard | cytosol, nucleus, vacuole | 87.74 | 88.31 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 87.74 | 88.31 |
| AT5G05780.1 | Thale cress | cytosol | 87.42 | 87.99 |
| CDY14102 | Canola | cytosol | 87.42 | 87.99 |
| CDY04967 | Canola | cytosol | 87.42 | 87.99 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 87.42 | 87.99 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 87.74 | 87.74 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 87.74 | 87.74 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 87.74 | 87.74 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 87.74 | 87.74 |
| CDX98863 | Canola | cytosol | 87.1 | 87.66 |
| Bra028748.1-P | Field mustard | cytosol, nucleus, plastid | 87.1 | 87.66 |
| Bra009133.1-P | Field mustard | cytosol | 86.77 | 87.34 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 87.1 | 87.1 |
| Zm00001d001966_P001 | Maize | cytosol | 89.03 | 86.52 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 83.55 | 78.25 |
| Os04t0661900-01 | Rice | cytosol | 42.9 | 78.24 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 18.06 | 59.57 |
| KRG89488 | Soybean | cytosol | 41.94 | 48.51 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 36.45 | 41.24 |
| CDY04139 | Canola | cytosol | 36.45 | 40.07 |
| CDX70711 | Canola | cytosol | 16.13 | 39.37 |
| Bra017408.1-P | Field mustard | cytosol | 37.74 | 37.99 |
| CDY06213 | Canola | cytosol | 18.39 | 32.57 |
| Bra032422.1-P | Field mustard | cytosol, nucleus, plastid | 28.39 | 29.43 |
| PGSC0003DMT400069899 | Potato | cytosol | 25.16 | 27.37 |
| CDX78706 | Canola | cytosol | 34.19 | 26.97 |
| Bra006369.1-P | Field mustard | cytosol | 34.84 | 26.93 |
| PGSC0003DMT400071416 | Potato | cytosol | 23.87 | 25.61 |
| PGSC0003DMT400056930 | Potato | cytosol, plastid | 8.39 | 22.61 |
| PGSC0003DMT400029338 | Potato | plastid | 21.61 | 21.54 |
Protein Annotations
| MapMan:19.2.6.2.2.7 | Gene3D:3.40.140.10 | ProteinID:ABB02648 | ProteinID:ABB02648.1 | EMBL:DQ222517 | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005838 |
| InterPro:IPR037518 | InterPro:JAMM/MPN+_dom | UniProt:M1BCL1 | InterPro:MPN | InterPro:MPN_RPN7_8 | PFAM:PF01398 |
| PFAM:PF13012 | EnsemblPlantsGene:PGSC0003DMG400016358 | PGSC:PGSC0003DMG400016358 | EnsemblPlants:PGSC0003DMT400042160 | PFscan:PS50249 | PANTHER:PTHR10540 |
| PANTHER:PTHR10540:SF7 | InterPro:Rpn11/EIF3F_C | SMART:SM00232 | UniParc:UPI000295D6AD | : | : |
Description
26S proteasome regulatory particle non-ATPase subunit 8 [Source:PGSC_GENE;Acc:PGSC0003DMG400016358]
Coordinates
chr1:-:4070910..4076760
Molecular Weight (calculated)
35039.2 Da
IEP (calculated)
6.452
GRAVY (calculated)
-0.146
Length
310 amino acids
Sequence
(BLAST)
(BLAST)
001: MDVIKSQQIS SRPIEKVIVH PLVLLSIVDH YNRVARDTRK RVVGVLLGTS FKGTVDVTNS YAVPFEEEDR DPSIWFLDHN YHESMFSMFR RINAKEHVVG
101: WYSTGPKLRE NDLNIHGLFN DYVPTPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ NVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLAALKGLD ARLQEIRSYL DVVIDGKLPL NHEILYHLQD VFNLLPNLNV AELVKSFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDSK
301: PRAVPTTAGS
101: WYSTGPKLRE NDLNIHGLFN DYVPTPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ NVFVHVPSEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: GKLAALKGLD ARLQEIRSYL DVVIDGKLPL NHEILYHLQD VFNLLPNLNV AELVKSFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKMLN KEHEKAEDSK
301: PRAVPTTAGS
001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS
Arabidopsis Description
RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.