Factsheet for Bra005867.1-P

Subcellular Localization

min:

: max

Winner_takes_all: vacuole, nucleus, cytosol

Predictor Summary:

nucleus 3
cytosol 1
mitochondrion 1
vacuole 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11340	Canola	extracellular	99.68	99.68
CDX80973	Canola	cytosol, nucleus, vacuole	99.35	99.35
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	98.38	98.38
Bra009133.1-P	Field mustard	cytosol	98.05	98.05
EES11600	Sorghum	cytosol	91.56	90.97
KRH31114	Soybean	endoplasmic reticulum	90.26	89.97
HORVU2Hr1G110590.1	Barley	cytosol	90.26	89.68
KRG97770	Soybean	nucleus	89.61	89.32
TraesCS2D01G496100.2	Wheat	cytosol	89.61	89.03
TraesCS2B01G524100.2	Wheat	cytosol	89.61	89.03
TraesCS2A01G495800.1	Wheat	golgi, unclear	89.61	89.03
GSMUA_Achr9P25620_001	Banana	cytosol	89.29	88.42
Zm00001d001966_P001	Maize	cytosol	91.56	88.4
PGSC0003DMT400042160	Potato	cytosol	88.31	87.74
Solyc01g008370.2.1	Tomato	nucleus	88.31	87.74
GSMUA_Achr8P20510_001	Banana	cytosol	87.99	87.42
Os04t0661900-01	Rice	cytosol	44.48	80.59
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	86.04	80.06
VIT_07s0005g03000.t01	Wine grape	nucleus	21.75	69.07
VIT_03s0017g00150.t01	Wine grape	nucleus	21.1	67.01
HORVU4Hr1G012380.1	Barley	cytosol	19.16	62.77
KRG89488	Soybean	cytosol	42.86	49.25
Bra017408.1-P	Field mustard	cytosol	43.51	43.51
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	31.82	32.78
Bra006369.1-P	Field mustard	cytosol	38.96	29.93
Bra004995.1-P	Field mustard	plastid	23.05	24.23
Bra000157.1-P	Field mustard	plastid	23.05	24.23
Bra019106.1-P	Field mustard	plastid	22.4	21.7
Bra002827.1-P	Field mustard	plastid	21.75	21.34
Bra026439.1-P	Field mustard	plastid	21.75	21.07

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra005867	EnsemblPlants:Bra005867.1	EnsemblPlants:Bra005867.1-P	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838
InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4CNS9	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI000253F5D1	SEG:seg	:	:	:	:

Description

AT5G05780 (E=6e-148) RPN8A, AE3, ATHMOV34 | RPN8A (RP NON-ATPASE SUBUNIT 8A)

Coordinates

chrA03:+:988965..991048

Molecular Weight (calculated)

34775.0 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.101

Length

308 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSRK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DSSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIDGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Best Arabidopsis Sequence Match ( AT5G05780.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPATS

Arabidopsis Description

RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.