Factsheet for Bra000157.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 5
cytosol 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60991	Canola	plastid	98.63	98.63
CDY24934	Canola	plastid	98.29	98.29
Bra004995.1-P	Field mustard	plastid	94.2	94.2
AT2G39990.1	Thale cress	plastid	91.13	91.13
VIT_13s0019g03470.t01	Wine grape	cytosol	73.72	75.79
KRH31118	Soybean	endoplasmic reticulum	74.06	75.35
KRG97767	Soybean	endoplasmic reticulum	73.72	74.74
PGSC0003DMT400069899	Potato	cytosol	70.31	72.28
Solyc11g013440.1.1	Tomato	plastid	69.97	71.93
Solyc05g052690.2.1	Tomato	cytosol	69.97	71.93
KRH14986	Soybean	endoplasmic reticulum	70.65	71.63
KRH73154	Soybean	endoplasmic reticulum	70.31	71.28
Os05t0104800-01	Rice	nucleus	64.85	66.9
KXG22419	Sorghum	plastid	64.85	66.2
Zm00001d011100_P002	Maize	plastid	64.51	65.85
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	64.16	64.16
TraesCS6D01G078000.1	Wheat	plastid	63.82	64.04
GSMUA_Achr9P28480_001	Banana	cytosol	63.82	63.82
TraesCS6A01G090300.1	Wheat	golgi	63.48	63.7
TraesCS6B01G112400.2	Wheat	plastid	63.14	63.36
PGSC0003DMT400071416	Potato	cytosol	62.12	62.98
Zm00001d035752_P002	Maize	plastid	63.48	60.98
HORVU6Hr1G014610.1	Barley	plastid	63.14	59.49
GSMUA_Achr2P16060_001	Banana	cytosol	24.91	59.35
GSMUA_Achr2P16050_001	Banana	cytosol	23.21	58.62
Bra009133.1-P	Field mustard	cytosol	24.23	23.05
Bra005867.1-P	Field mustard	cytosol, nucleus, vacuole	24.23	23.05
Bra028748.1-P	Field mustard	cytosol, nucleus, plastid	23.89	22.73
Bra019106.1-P	Field mustard	plastid	23.21	21.38
Bra026439.1-P	Field mustard	plastid	22.87	21.07
Bra002827.1-P	Field mustard	plastid	21.5	20.06
Bra017408.1-P	Field mustard	cytosol	20.14	19.16
Bra032422.1-P	Field mustard	cytosol, nucleus, plastid	17.06	16.72
Bra006369.1-P	Field mustard	cytosol	20.82	15.21

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	EnsemblPlantsGene:Bra000157	EnsemblPlants:Bra000157.1	EnsemblPlants:Bra000157.1-P	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M4C7H9	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI0002540252	InterPro:eIF3f	SEG:seg	:	:

Description

AT2G39990 (E=7e-141) EIF2 | EIF2; translation initiation factor

Coordinates

chrA03:-:9615978..9617616

Molecular Weight (calculated)

31997.1 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.009

Length

293 amino acids

Sequence
(BLAST)

001: MAATNEHTVL QFVTPSSTAS TTTQVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NPKEVIVGWY STGAGVNGGS ALIHDFFARE ATNPIHLTVD TGFTNGEGTI KAYVSSNLSL GDRQLAAQFQ EIPVDLRMVE AERVGYDVLK ATAVDKLPND
201: MEGIELTMER LLTLINDVYK YVDSVVEGKT SPDNNIGRFI AEAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.