CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d011100_P002	Maize	plastid	95.82	95.82
Zm00001d035752_P002	Maize	plastid	95.47	89.84
Os05t0104800-01	Rice	nucleus	85.37	86.27
TraesCS6A01G090300.1	Wheat	golgi	85.02	83.56
TraesCS6B01G112400.2	Wheat	plastid	84.67	83.22
TraesCS6D01G078000.1	Wheat	plastid	84.32	82.88
HORVU6Hr1G014610.1	Barley	plastid	83.62	77.17
KRG97767	Soybean	endoplasmic reticulum	72.13	71.63
VIT_13s0019g03470.t01	Wine grape	cytosol	71.08	71.58
GSMUA_Achr9P28480_001	Banana	cytosol	72.47	70.99
KRH31118	Soybean	endoplasmic reticulum	71.08	70.83
Solyc05g052690.2.1	Tomato	cytosol	70.03	70.53
PGSC0003DMT400069899	Potato	cytosol	69.69	70.18
Solyc11g013440.1.1	Tomato	plastid	69.34	69.82
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	71.08	69.62
KRH73154	Soybean	endoplasmic reticulum	69.69	69.2
KRH14986	Soybean	endoplasmic reticulum	68.99	68.51
CDX74814	Canola	cytosol, plastid	66.9	66.44
CDY65775	Canola	cytosol, plastid	65.85	65.4
Bra004995.1-P	Field mustard	plastid	66.55	65.19
Bra000157.1-P	Field mustard	plastid	66.2	64.85
CDY24934	Canola	plastid	66.2	64.85
AT2G39990.1	Thale cress	plastid	65.85	64.51
CDY60991	Canola	plastid	65.51	64.16
GSMUA_Achr2P16050_001	Banana	cytosol	24.74	61.21
GSMUA_Achr2P16060_001	Banana	cytosol	26.13	60.98
PGSC0003DMT400071416	Potato	cytosol	61.32	60.9
EES11600	Sorghum	cytosol	25.44	23.55
EES14305	Sorghum	plastid	21.6	18.67

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	UniProt:A0A1B6P9J7	GO:GO:0000003	GO:GO:0001731	GO:GO:0001732
GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005829	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0007275
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009744	GO:GO:0009790
GO:GO:0009791	GO:GO:0009793	GO:GO:0009846	GO:GO:0009856	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
EnsemblPlants:KXG22419	ProteinID:KXG22419	ProteinID:KXG22419.1	HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232
EnsemblPlantsGene:SORBI_3009G212300	UniParc:UPI00081AD9C8	InterPro:eIF3f	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr9:+:55800389..55803093

Molecular Weight (calculated)

31568.5 Da

IEP (calculated)

5.012

GRAVY (calculated)

-0.077

Length

287 amino acids

Sequence
(BLAST)

001: MATSSALLFP SPSSASSPPS SARVEAVVLF NVCDSYVRRP DQADRVIGTL LGSLLPDGTV HVRNSYVVPH SESADQVAID IDYHHNMYAS HQKVNPKEVI
101: VGWFSTGFGV SGGSTLIHEF YSREVQNPIH LTVDTGFTRG EASIKAYISS NLSLGDRHLA AQFQEIPLDL RMIEAEKAGF EILKSTMVEK LPNDLEGMES
201: SMEKLYILID EIYKYVDDVV EGRVAPDNRI GRFISDSVAS MPKLSPAAFD KLFNDKIQDN LALVYLSSIT RTQITIAEKL NTAAQVL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.