Factsheet for GSMUA_Achr6P05250_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
cytosol 3
nucleus 1
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	plastid
EpiLoc:	cytosol
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	plastid
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P28480_001	Banana	cytosol	91.13	91.13
GSMUA_Achr2P16060_001	Banana	cytosol	33.11	78.86
GSMUA_Achr2P16050_001	Banana	cytosol	28.33	71.55
VIT_13s0019g03470.t01	Wine grape	cytosol	69.28	71.23
Os05t0104800-01	Rice	nucleus	68.94	71.13
KXG22419	Sorghum	plastid	69.62	71.08
PGSC0003DMT400069899	Potato	cytosol	67.24	69.12
Zm00001d011100_P002	Maize	plastid	67.58	68.99
Solyc11g013440.1.1	Tomato	plastid	66.89	68.77
Solyc05g052690.2.1	Tomato	cytosol	66.89	68.77
TraesCS6D01G078000.1	Wheat	plastid	67.58	67.81
TraesCS6A01G090300.1	Wheat	golgi	67.58	67.81
KRH31118	Soybean	endoplasmic reticulum	66.55	67.71
TraesCS6B01G112400.2	Wheat	plastid	67.24	67.47
KRG97767	Soybean	endoplasmic reticulum	66.21	67.13
Zm00001d035752_P002	Maize	plastid	68.6	65.9
KRH73154	Soybean	endoplasmic reticulum	64.16	65.05
KRH14986	Soybean	endoplasmic reticulum	63.48	64.36
Bra000157.1-P	Field mustard	plastid	64.16	64.16
CDY65775	Canola	cytosol, plastid	63.14	64.01
CDX74814	Canola	cytosol, plastid	63.14	64.01
CDY60991	Canola	plastid	63.82	63.82
CDY24934	Canola	plastid	63.48	63.48
Bra004995.1-P	Field mustard	plastid	63.14	63.14
HORVU6Hr1G014610.1	Barley	plastid	66.89	63.02
AT2G39990.1	Thale cress	plastid	61.77	61.77
PGSC0003DMT400071416	Potato	cytosol	60.07	60.9
GSMUA_Achr8P20510_001	Banana	cytosol	27.3	25.81
GSMUA_Achr9P25620_001	Banana	cytosol	26.62	25.08
GSMUA_Achr5P04140_001	Banana	plastid	22.18	21.04

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413
GO:GO:0006446	GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0016043	GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSMUA_Achr6G05250_001	EnsemblPlants:GSMUA_Achr6P05250_001
EnsemblPlants:GSMUA_Achr6T05250_001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	UniProt:M0T4C3	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI0002964F3A	InterPro:eIF3f	SEG:seg	:	:

Description

Eukaryotic translation initiation factor 3 subunit F [Source:GMGC_GENE;Acc:GSMUA_Achr6G05250_001]

Coordinates

chr6:-:3544149..3547865

Molecular Weight (calculated)

32342.7 Da

IEP (calculated)

4.811

GRAVY (calculated)

-0.020

Length

293 amino acids

Sequence
(BLAST)

001: MAVLQFFPPS SPVVSARLHP VVLFSICDCY VRRPDQADRV IGTLLGTVSG GVVEIKNSYA VPHNESADQV ALDVEYHRNM YMSHLKVNPK EVLVGWYSTG
101: FGVSGGSALI HDFYVKELKD STKDIREAQN SVPPVHLTVD TVFSNGEASI KAYMSVNLSL GDRSLAAQFQ EIPLDLRMIE AERVGFDILK KTAVDKLPND
201: LEGMEASMER LYALIDDAYK YVDDVVEGRV NPDNDIGRFL SDTLASVPKM SPIAFDKVFN DRVQDNLALV YLSSLIRAQL GIAEKLNTAA QVL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.