CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1
plastid 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 23041469
endoplasmic reticulum: 27224218
mitochondrion: 27780359

msms PMID: 27780359 doi

G Mustafa, S Komatsu

Graduate School of Life and Environmental Science, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

msms PMID: 23041469 doi

S Komatsu, R Kuji, Y Nanjo, S Hiraga, K Furukawa

National Institute of Crop Science, Tsukuba 305-8518, Japan. skomatsu@affrc.go.jp

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH14986	Soybean	endoplasmic reticulum	97.23	97.23
KRG97767	Soybean	endoplasmic reticulum	84.78	84.78
KRH31118	Soybean	endoplasmic reticulum	83.74	84.03
VIT_13s0019g03470.t01	Wine grape	cytosol	78.2	79.3
PGSC0003DMT400069899	Potato	cytosol	74.39	75.44
Solyc05g052690.2.1	Tomato	cytosol	74.39	75.44
Solyc11g013440.1.1	Tomato	plastid	73.01	74.04
Os05t0104800-01	Rice	nucleus	72.32	73.59
CDX74814	Canola	cytosol, plastid	72.66	72.66
CDY65775	Canola	cytosol, plastid	70.59	70.59
Bra000157.1-P	Field mustard	plastid	71.28	70.31
CDY24934	Canola	plastid	71.28	70.31
Bra004995.1-P	Field mustard	plastid	70.93	69.97
KXG22419	Sorghum	plastid	69.2	69.69
CDY60991	Canola	plastid	70.59	69.62
Zm00001d011100_P002	Maize	plastid	68.51	68.99
AT2G39990.1	Thale cress	plastid	69.9	68.94
TraesCS6A01G090300.1	Wheat	golgi	68.86	68.15
TraesCS6D01G078000.1	Wheat	plastid	68.86	68.15
TraesCS6B01G112400.2	Wheat	plastid	68.51	67.81
Zm00001d035752_P002	Maize	plastid	68.17	64.59
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	65.05	64.16
GSMUA_Achr9P28480_001	Banana	cytosol	64.71	63.82
PGSC0003DMT400071416	Potato	cytosol	63.67	63.67
HORVU6Hr1G014610.1	Barley	plastid	67.47	62.7
GSMUA_Achr2P16060_001	Banana	cytosol	24.91	58.54
GSMUA_Achr2P16050_001	Banana	cytosol	22.84	56.9
KRH31114	Soybean	endoplasmic reticulum	29.41	27.51
KRG97770	Soybean	nucleus	29.41	27.51
KRH56376	Soybean	plastid	24.57	22.05
KRH62556	Soybean	plastid	24.22	22.01
KRG89488	Soybean	cytosol	13.15	14.18

Protein Annotations

EntrezGene:100775223	MapMan:17.4.1.3.6	Gene3D:3.40.140.10	EMBL:ACUP02001267	EnsemblPlantsGene:GLYMA_02G254900	GO:GO:0001731
GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003743
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446	GO:GO:0008135	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0016282	GO:GO:0019538
GO:GO:0031369	GO:GO:0033290	GO:GO:0071541	UniProt:I1JI63	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
EnsemblPlants:KRH73154	ProteinID:KRH73154	ProteinID:KRH73154.1	MEROPS:M67.974	HAMAP:MF_03005	InterPro:MPN
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI0002336C10	InterPro:eIF3f	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr2:-:44198456..44201571

Molecular Weight (calculated)

31639.9 Da

IEP (calculated)

5.320

GRAVY (calculated)

-0.007

Length

289 amino acids

Sequence
(BLAST)

001: MEAPSMAATE RTVLQFSSSQ SLSAKVHPLV VFNICDCYVR RPDQAERVIG TLLGSILPNG TVDVRNSYAV PHSESVDQVA LDIEYQHSML LSHQKVNPKE
101: VIVGWYSTGL GVTGGSALIH EFYSREVPNP IHLTVDTGFT KGACTIKAYV SHNLSLGDRQ IAAQFQEIPL DLRMVEAERI GFDTLKATAV NKIPSDLEGM
201: EASMGHLLAL IDDIHKYVDD VVEGRIDPDN KIGRFISDAV GSIPKLPSSA FEKLVNDSLQ DHLLLLYLSS ITRTQLSLAE KLNTAAQIL

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.