CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 5
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra000157.1-P	Field mustard	plastid	98.29	98.29
CDY60991	Canola	plastid	98.29	98.29
AT2G39990.1	Thale cress	plastid	92.15	92.15
CDY65775	Canola	cytosol, plastid	88.74	89.97
CDX74814	Canola	cytosol, plastid	87.03	88.24
VIT_13s0019g03470.t01	Wine grape	cytosol	73.72	75.79
KRH31118	Soybean	endoplasmic reticulum	74.4	75.69
KRG97767	Soybean	endoplasmic reticulum	74.06	75.09
Solyc11g013440.1.1	Tomato	plastid	70.31	72.28
PGSC0003DMT400069899	Potato	cytosol	69.97	71.93
KRH14986	Soybean	endoplasmic reticulum	70.65	71.63
Solyc05g052690.2.1	Tomato	cytosol	69.62	71.58
KRH73154	Soybean	endoplasmic reticulum	70.31	71.28
Os05t0104800-01	Rice	nucleus	65.87	67.96
KXG22419	Sorghum	plastid	64.85	66.2
Zm00001d011100_P002	Maize	plastid	64.51	65.85
TraesCS6D01G078000.1	Wheat	plastid	63.82	64.04
TraesCS6A01G090300.1	Wheat	golgi	63.48	63.7
GSMUA_Achr6P05250_001	Banana	cytosol, plastid	63.48	63.48
TraesCS6B01G112400.2	Wheat	plastid	63.14	63.36
PGSC0003DMT400071416	Potato	cytosol	62.46	63.32
GSMUA_Achr9P28480_001	Banana	cytosol	63.14	63.14
Zm00001d035752_P002	Maize	plastid	63.48	60.98
HORVU6Hr1G014610.1	Barley	plastid	63.14	59.49
GSMUA_Achr2P16050_001	Banana	cytosol	23.55	59.48
GSMUA_Achr2P16060_001	Banana	cytosol	24.57	58.54
CDY14102	Canola	cytosol	24.57	23.38
CDY04967	Canola	cytosol	24.57	23.38
CDX70129	Canola	cytosol, nucleus, vacuole	24.23	23.05
CDY11340	Canola	extracellular	24.23	23.05
CDX80973	Canola	cytosol, nucleus, vacuole	24.23	23.05
CDX98863	Canola	cytosol	23.89	22.73
CDY17426	Canola	cytosol, nucleus, plastid	21.16	22.63
CDY04139	Canola	cytosol	21.5	22.34
CDY06213	Canola	cytosol	13.31	22.29
CDY42737	Canola	plastid	22.87	21.07
CDX94336	Canola	plastid	22.87	21.07
CDX89337	Canola	plastid	22.87	21.07
CDY32798	Canola	plastid	22.18	20.7
CDY49389	Canola	plastid	21.84	20.13
CDX92773	Canola	plastid	22.18	18.47
CDX70711	Canola	cytosol	6.83	15.75
CDX78706	Canola	cytosol	19.11	14.25

Protein Annotations

MapMan:17.4.1.3.6	Gene3D:3.40.140.10	GO:A0A078GI07	UniProt:A0A078GI07	EnsemblPlants:CDY24934	ProteinID:CDY24934
ProteinID:CDY24934.1	GO:GO:0001731	GO:GO:0001732	GO:GO:0002183	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003743	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005852	GO:GO:0006412	GO:GO:0006413	GO:GO:0006446
GO:GO:0008135	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0016282	GO:GO:0019538	GO:GO:0033290	EnsemblPlantsGene:GSBRNA2T00028729001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
HAMAP:MF_03005	InterPro:MPN	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF6	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0004EC21B0	InterPro:eIF3f	SEG:seg

Description

BnaC03g22380DEukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/TrEMBL;Acc:A0A078GI07]

Coordinates

chrLK032166:+:322055..323981

Molecular Weight (calculated)

32058.2 Da

IEP (calculated)

4.674

GRAVY (calculated)

-0.034

Length

293 amino acids

Sequence
(BLAST)

001: MAATNEHTVL QFVTPSSTAS TTTQVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NPKEVIVGWY STGAGVNGGS ALIHDFFARE VTNPIHLTVD TGFTNGEGTI KAYVSSNLSL GDRQLAAQFQ EIPVDLRMVE AERVGYDVLK ATAVDKLPND
201: MEGMEQTMER LLTLINDVYK YVDSVVEGKT SPDNNIGRFI AEAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Best Arabidopsis Sequence Match ( AT2G39990.1 )
(BLAST)

001: MAATSEHTIL QFVSPSSTAS ATTSVLTARI HPLVIFNVCD CFVRRPDSAE RVIGTLLGSI LPDGTVDIRN SYAVPHNESS DQVAVDIDYH HNMLASHLKV
101: NSKETIVGWY STGAGVNGGS SLIHDFYARE VPNPIHLTVD TGFTNGEGTI KAFVSSNLSL GDRQLVAHFQ EIPVDLRMVD AERVGFDVLK ATSVDKLPND
201: LEGMELTMER LLTLINDVYK YVDSVVGGQI APDNNIGRFI ADAVASLPKL PPQVFDNLVN DSLQDQLLLL YLSSITRTQL SLAEKLNTAA QML

Arabidopsis Description

TIF3F1Eukaryotic translation initiation factor 3 subunit F [Source:UniProtKB/Swiss-Prot;Acc:O04202]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.