CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
Predotar:	secretory
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90073
CDY00413
CDY01302
CDY04768
CDY15130
CDY21400
CDY25761
CDY38053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	CDX90073	AT1G02090.1	11742986
AT4G26430.1	CDY00413	AT1G02090.1	11742986
AT4G26430.1	CDY01302	AT1G02090.1	11742986
AT4G26430.1	CDY15130	AT1G02090.1	11742986
AT4G26430.1	CDY38053	AT1G02090.1	11742986
AT4G26430.1	CDX90073	AT1G02090.1	21798944
AT4G26430.1	CDY00413	AT1G02090.1	21798944
AT4G26430.1	CDY01302	AT1G02090.1	21798944
AT4G26430.1	CDY15130	AT1G02090.1	21798944
AT4G26430.1	CDY38053	AT1G02090.1	21798944
AT4G26430.1	CDY04768	AT1G22920.1	11742986
AT4G26430.1	CDY21400	AT1G22920.1	11742986
AT4G26430.1	CDY25761	AT1G22920.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX89337	Canola	plastid	92.14	92.14
CDY42737	Canola	plastid	86.16	86.16
AT4G26430.1	Thale cress	plastid	85.85	86.12
VIT_19s0015g01950.t01	Wine grape	plastid	79.56	79.81
CDY32798	Canola	plastid	78.62	79.62
CDY49389	Canola	plastid	79.56	79.56
Solyc10g005660.2.1	Tomato	plastid	76.42	77.64
GSMUA_Achr5P04140_001	Banana	plastid	75.16	77.35
KRH62556	Soybean	plastid	75.47	75.47
KRH56376	Soybean	plastid	75.47	74.53
CDX92773	Canola	plastid	81.13	73.3
PGSC0003DMT400056930	Potato	cytosol, plastid	25.79	71.3
Os08t0500000-01	Rice	plasma membrane	72.96	70.52
EES14305	Sorghum	plastid	71.7	68.67
Zm00001d031323_P001	Maize	extracellular	71.07	68.07
TraesCS7A01G241300.1	Wheat	plastid	72.01	67.95
TraesCS7D01G240300.1	Wheat	golgi, unclear	72.01	67.95
HORVU7Hr1G049190.1	Barley	plastid	71.7	67.66
TraesCS7B01G136800.1	Wheat	plastid	71.7	67.66
Zm00001d052848_P004	Maize	plastid	71.07	66.28
CDX74814	Canola	cytosol, plastid	22.64	24.91
CDY65775	Canola	cytosol, plastid	21.7	23.88
CDY60991	Canola	plastid	21.07	22.87
CDY24934	Canola	plastid	21.07	22.87
CDX70711	Canola	cytosol	9.12	22.83
CDY14102	Canola	cytosol	21.38	22.08
CDY11340	Canola	extracellular	21.38	22.08
CDY04967	Canola	cytosol	21.38	22.08
CDX98863	Canola	cytosol	21.38	22.08
CDX80973	Canola	cytosol, nucleus, vacuole	21.38	22.08
CDX70129	Canola	cytosol, nucleus, vacuole	21.38	22.08
CDY06213	Canola	cytosol	11.01	20.0
CDY17426	Canola	cytosol, nucleus, plastid	14.15	16.42
CDY04139	Canola	cytosol	14.15	15.96
CDX78706	Canola	cytosol	15.09	12.21

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EnsemblPlants:CDX94336	ProteinID:CDX94336	ProteinID:CDX94336.1	GO:GO:0000338
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180	GO:GO:0009987
GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00157445001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	InterPro:MPN_CSN6
PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C
SMART:SM00232	UniParc:UPI0004EE8FF0	SEG:seg	:	:	:

Description

BnaC01g18480D

Coordinates

chrLK031881:-:302941..305234

Molecular Weight (calculated)

35377.2 Da

IEP (calculated)

6.346

GRAVY (calculated)

-0.223

Length

318 amino acids

Sequence
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHLTRVKT QLNPPASSCA NGNNPSTGDA TLLPQDFRVY GCVIGAQKGR TVEIFNSFEL LLDPTTDTLD RSFLEKKQEL
101: YQKVFPNFYI LGWYSTGSEA NESDMSIHKA LMDINESPVY VLLNPAINHA QKDLPVTIYE SEFHVIDGIP QPIFVNASYT IETVEAERIS VDHVAHLKPS
201: DGGSAATQLA AHLTGIHSAI KMLNSRIRVL HQYLGSMQKG DIPCDNSLLR QVASLLRSLP AAQSEKFKED FLMEYNDKLL MSYLAMITNC TSNMNEVVDK
301: FNTAYERNSR RGGRTPFI

Best Arabidopsis Sequence Match ( AT4G26430.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM

Arabidopsis Description

CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.