Factsheet for TraesCS7B01G136800.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G228300.1
TraesCS2A01G504600.1
TraesCS2B01G253600.2
TraesCS2D01G239100.1
TraesCS2D01G505300.1
TraesCS4A01G041600.1
TraesCS4B01G262600.1
TraesCS4D01G262700.1
TraesCS7A01G241300.1
TraesCS7A01G315600.1
TraesCS7B01G136800.1
TraesCS7B01G216600.2
TraesCS7D01G240300.1
TraesCS7D01G312600.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	TraesCS2A01G228300.1	AT1G02090.1	11742986
AT4G26430.1	TraesCS2B01G253600.2	AT1G02090.1	11742986
AT4G26430.1	TraesCS2D01G239100.1	AT1G02090.1	11742986
AT4G26430.1	TraesCS2A01G228300.1	AT1G02090.1	21798944
AT4G26430.1	TraesCS2B01G253600.2	AT1G02090.1	21798944
AT4G26430.1	TraesCS2D01G239100.1	AT1G02090.1	21798944
AT4G26430.1	TraesCS2A01G504600.1	AT1G22920.1	11742986
AT4G26430.1	TraesCS2D01G505300.1	AT1G22920.1	11742986
AT4G26430.1	TraesCS2A01G504600.1	AT1G71230.1	11742986
AT4G26430.1	TraesCS2D01G505300.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	11701877
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	11701877
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	11701877
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	11742986
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	11742986
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	11742986
AT5G56280.1	TraesCS2A01G228300.1	AT1G02090.1	12615944
AT5G56280.1	TraesCS2B01G253600.2	AT1G02090.1	12615944
AT5G56280.1	TraesCS2D01G239100.1	AT1G02090.1	12615944
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	11701877
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	11701877
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	11742986
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	11742986
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	12615944
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	12615944
AT5G56280.1	TraesCS2A01G504600.1	AT1G22920.1	21798944
AT5G56280.1	TraesCS2D01G505300.1	AT1G22920.1	21798944
AT5G56280.1	TraesCS2A01G504600.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS2D01G505300.1	AT1G71230.1	11742986
AT5G56280.1	TraesCS7A01G315600.1	AT5G14250.1	11701877
AT5G56280.1	TraesCS7B01G216600.2	AT5G14250.1	11701877
AT5G56280.1	TraesCS7D01G312600.2	AT5G14250.1	11701877
AT5G56280.1	TraesCS7A01G315600.1	AT5G14250.1	12615944
AT5G56280.1	TraesCS7B01G216600.2	AT5G14250.1	12615944
AT5G56280.1	TraesCS7D01G312600.2	AT5G14250.1	12615944
AT5G56280.1	TraesCS4A01G041600.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4B01G262600.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4D01G262700.1	AT5G42970.1	11701877
AT5G56280.1	TraesCS4A01G041600.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS4B01G262600.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS4D01G262700.1	AT5G42970.1	12615944
AT5G56280.1	TraesCS7A01G241300.1	AT5G56280.1	11742986
AT5G56280.1	TraesCS7B01G136800.1	AT5G56280.1	11742986
AT5G56280.1	TraesCS7D01G240300.1	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS7D01G240300.1	Wheat	golgi, unclear	98.81	98.81
TraesCS7A01G241300.1	Wheat	plastid	98.22	98.22
HORVU7Hr1G049190.1	Barley	plastid	98.22	98.22
Os08t0500000-01	Rice	plasma membrane	81.31	83.28
Zm00001d031323_P001	Maize	extracellular	79.23	80.42
EES14305	Sorghum	plastid	78.93	80.12
Zm00001d052848_P004	Maize	plastid	80.12	79.18
GSMUA_Achr5P04140_001	Banana	plastid	71.22	77.67
VIT_19s0015g01950.t01	Wine grape	plastid	73.0	77.6
PGSC0003DMT400029338	Potato	plastid	70.03	75.88
CDY32798	Canola	plastid	70.33	75.48
CDY49389	Canola	plastid	71.22	75.47
AT5G56280.1	Thale cress	plastid	70.92	75.39
Solyc10g005660.2.1	Tomato	plastid	69.73	75.08
Bra002827.1-P	Field mustard	plastid	69.44	74.52
KRH62556	Soybean	plastid	69.44	73.58
PGSC0003DMT400056930	Potato	cytosol, plastid	24.93	73.04
KRH56376	Soybean	plastid	69.44	72.67
AT4G26430.1	Thale cress	plastid	67.95	72.24
CDX89337	Canola	plastid	67.95	72.01
Bra026439.1-P	Field mustard	plastid	67.95	72.01
CDX94336	Canola	plastid	67.66	71.7
CDY42737	Canola	plastid	66.17	70.13
Bra019106.1-P	Field mustard	plastid	65.58	69.5
CDX92773	Canola	plastid	62.91	60.23
TraesCS2B01G524100.2	Wheat	cytosol	18.99	20.65
TraesCS6B01G112400.2	Wheat	plastid	16.91	19.52

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150
GO:GO:0008152	GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom
InterPro:MPN	InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540
PANTHER:PTHR10540:SF8	InterPro:Rpn11/EIF3F_C	SMART:SM00232	EnsemblPlantsGene:TraesCS7B01G136800	EnsemblPlants:TraesCS7B01G136800.1	TIGR:cd08063
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7B:-:168756194..168760476

Molecular Weight (calculated)

36877.0 Da

IEP (calculated)

6.241

GRAVY (calculated)

-0.142

Length

337 amino acids

Sequence
(BLAST)

001: MSTPSDPAAS AQPPSTAATS SSGLTFKLHP LVIVNVSDHY TRVKAQASFT AEAPSPGKAQ ASCSAEGSSA PAEPPRVFGC VIGVQRGRTV EIFNSFELVL
101: DPVTGTLERA FLEKKLELYK KVFPEFYVLG WYSTGSDVQD TDILIHKALM DINESPVYLL LNPAINHSQK DLPVTIYESE LHVIDGGPQL IFVKSNYTIE
201: TVEAERISVD HVAHLKPSDG GSAATQLAAH LTGIHSAIKM LNSRVRVIQQ YLGAMQKGDM PLDNSLLRQV SSLVRRLPAV ESEKFQGDFL TEYNDTLLMT
301: YLAMFTNCSS TMNELVEKFN TTYERSPARR GGRGAFM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.