Factsheet for Os08t0500000-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
plastid 5
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0197400-01
Os04t0654700-02
Os07t0490800-01
Os08t0119000-01
Os08t0500000-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	Os07t0490800-01	AT1G02090.1	11742986
AT4G26430.1	Os07t0490800-01	AT1G02090.1	21798944
AT4G26430.1	Os04t0654700-02	AT1G22920.1	11742986
AT4G26430.1	Os04t0654700-02	AT1G71230.1	11742986
AT5G56280.1	Os07t0490800-01	AT1G02090.1	11701877
AT5G56280.1	Os07t0490800-01	AT1G02090.1	11742986
AT5G56280.1	Os07t0490800-01	AT1G02090.1	12615944
AT5G56280.1	Os04t0654700-02	AT1G22920.1	11701877
AT5G56280.1	Os04t0654700-02	AT1G22920.1	11742986
AT5G56280.1	Os04t0654700-02	AT1G22920.1	12615944
AT5G56280.1	Os04t0654700-02	AT1G22920.1	21798944
AT5G56280.1	Os04t0654700-02	AT1G71230.1	11742986
AT5G56280.1	Os08t0119000-01	AT5G14250.1	11701877
AT5G56280.1	Os08t0119000-01	AT5G14250.1	12615944
AT5G56280.1	Os03t0197400-01	AT5G42970.1	11701877
AT5G56280.1	Os03t0197400-01	AT5G42970.1	12615944
AT5G56280.1	Os08t0500000-01	AT5G56280.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d031323_P001	Maize	extracellular	87.54	86.75
EES14305	Sorghum	plastid	86.63	85.84
Zm00001d052848_P004	Maize	plastid	85.71	82.7
TraesCS7D01G240300.1	Wheat	golgi, unclear	83.59	81.6
TraesCS7B01G136800.1	Wheat	plastid	83.28	81.31
TraesCS7A01G241300.1	Wheat	plastid	83.28	81.31
HORVU7Hr1G049190.1	Barley	plastid	83.28	81.31
GSMUA_Achr5P04140_001	Banana	plastid	74.77	79.61
VIT_19s0015g01950.t01	Wine grape	plastid	75.08	77.92
CDY32798	Canola	plastid	73.86	77.39
AT5G56280.1	Thale cress	plastid	73.56	76.34
Bra002827.1-P	Field mustard	plastid	72.64	76.11
CDY49389	Canola	plastid	73.56	76.1
PGSC0003DMT400029338	Potato	plastid	71.43	75.56
Solyc10g005660.2.1	Tomato	plastid	71.73	75.4
KRH62556	Soybean	plastid	72.04	74.53
PGSC0003DMT400056930	Potato	cytosol, plastid	25.84	73.91
AT4G26430.1	Thale cress	plastid	71.12	73.82
KRH56376	Soybean	plastid	71.43	72.98
CDX89337	Canola	plastid	70.52	72.96
Bra026439.1-P	Field mustard	plastid	70.52	72.96
CDX94336	Canola	plastid	70.52	72.96
Bra019106.1-P	Field mustard	plastid	69.0	71.38
CDY42737	Canola	plastid	69.0	71.38
CDX92773	Canola	plastid	65.96	61.65
Os04t0661900-01	Rice	cytosol	12.46	24.12
Os05t0104800-01	Rice	nucleus	18.24	21.13
Os12t0622900-01	Rice	cytosol	31.61	20.84
Os12t0621900-02	Rice	plastid	30.7	18.4

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	EntrezGene:4345944	EMBL:AK058215	ProteinID:BAD08810.1	ProteinID:BAT06103.1
ProteinID:EEE68946.1	GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152
GO:GO:0008180	GO:GO:0009987	GO:GO:0019538	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN
InterPro:MPN_CSN6	EnsemblPlantsGene:Os08g0500000	EnsemblPlants:Os08t0500000-01	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249
PANTHER:PTHR10540	PANTHER:PTHR10540:SF8	UniProt:Q6ZKM2	InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI000023AC11
RefSeq:XP_015648541.1	SEG:seg	:	:	:	:

Description

Mov34 homolog, COP9 signalosome 6Subunit of the COP9 signalosome, Early response to iron deficiency (Os08t0500000-01)

Coordinates

chr8:-:24681236..24684529

Molecular Weight (calculated)

36026.1 Da

IEP (calculated)

6.586

GRAVY (calculated)

-0.102

Length

329 amino acids

Sequence
(BLAST)

001: MSAPSDPAVA THPQAGAAAA ASSSSGLTFK LHPLVIVNVS DHHTRVKAQA ACSGDGASSA AAGGQPPRVF GCVIGVQRGR TVEIFNSFEL VLDPVSGTLD
101: RAFLEKKQEL YKKVFPDFYV LGWYSTGSDV RDTDMQIHKA LMDINESPVY LLLNPAINLS QKDLPVTIYE SELHVIDGSP QLIFVRANYT IETVEAERIS
201: VDHVAHLKPS DGGSAATQLA AHLTGIHSAI KMLNSRVRVI HQYLVSMQKG DMPLDNSLLR QVSSLVRRLP AMESEKFQDD FLMEYNDTLL MTYLAMFTNC
301: SSTMNELVEK FNATYERSTA RRGGRGAFM

Best Arabidopsis Sequence Match ( AT5G56280.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVIVN ISDHYTRVKT QLNPPASICA SGHGSNNGEA MFQQNPRVYG CVIGVQRGRT VEIFNSFELL YDPSTQTLDR SFLEKKQELY
101: KKVFPDFYIL GWYSTGSDAE ESDMHIHKAL MDINESPVYV LLNPAINHTQ KDLPVTIYES ELHVIDGIPQ LIFAHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QNLAAMQKGD KSCDNSVLRQ VSSLLRRLPA MESERFQDNF LMEYNDKLLI TYLAMITNCS SNMNEMVDKF
301: NTAYDRNTRR GGRTAFM

Arabidopsis Description

CSN6ACSN6A [Source:UniProtKB/TrEMBL;Acc:A0A178UD14]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.