Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- cytosol 2
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0622900-01 | Rice | cytosol | 31.51 | 34.67 |
| Os08t0500000-01 | Rice | plasma membrane | 18.4 | 30.7 |
| TraesCS3A01G162000.1 | Wheat | cytosol, plastid | 32.06 | 29.78 |
| Os05t0104800-01 | Rice | nucleus | 8.38 | 16.2 |
| HORVU2Hr1G110670.1 | Barley | cytosol, mitochondrion, plastid | 2.19 | 12.63 |
| Os04t0661900-01 | Rice | cytosol | 3.83 | 12.35 |
| TraesCS1D01G370500.1 | Wheat | cytosol | 2.73 | 3.27 |
Protein Annotations
| Gene3D:3.40.140.10 | MapMan:35.1 | EntrezGene:4352824 | ProteinID:ABA99915.1 | ProteinID:BAT18148.1 | GO:GO:0000338 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006464 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008180 | GO:GO:0009987 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0019538 | InterPro:JAMM/MPN+_dom | InterPro:MPN_CSN6 | EnsemblPlantsGene:Os12g0621900 |
| EnsemblPlants:Os12t0621900-02 | PFAM:PF01398 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF8 | UniProt:Q2QM04 | TMHMM:TMhelix |
| UniParc:UPI0000680BE9 | RefSeq:XP_015620585.1 | SEG:seg | : | : | : |
Description
Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-01);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-02);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-03);Similar to Mov34/MPN/PAD-1 family protein, expressed. (Os12t0621900-04)
Coordinates
chr12:+:26551391..26555810
Molecular Weight (calculated)
62249.3 Da
IEP (calculated)
7.016
GRAVY (calculated)
-0.152
Length
549 amino acids
Sequence
(BLAST)
(BLAST)
001: MPLRPPPPPQ GFLTAYPSAA FPPVKRPHED DLGAGDVLTF RFHSLAVLKL FDRIREYRLH DYRYQATRGW YSSGTAPEDA LLPCAVARPP RMYGCVIGVQ
101: RGRTVEVVDT SDILLDTDPG TLDRDLLKKK LETYKKAFPG LAILGWYSID THVTNTDMET NQALMDASGT TFYLLFNPAM NLSLKDLPVT IYEKVHSTNR
201: SPTPLIFVQG KYKTETVEAE RISLDHTCPV VSDVSVPPLV GKGQHANIMQ TSGFKLMLFE IPSGFAMFEV SQELIARPKD IWARFAYQDD ITNVIVTLGS
301: IQIHNKSVAR DIIVGPGDEL KEFILSFCTH NYLIVQDVEL KDVIEKKLNI YCYCNPTVVG ELTWGLNYVL HKLLPQEQSL THEPYLPLSK AMSKQIKEYG
401: FKISPREIDR EFLRAMSFLN YLGYMSERYS LLLDHLFGQY RKNNMSDIEF AKSIASHLHS SEGIVPRDER YTRAEIMEFI DFIIAAPENR SRTLSFLRRI
501: EAASIDDSPP PPSLPGGMGV SLLKRLRLDW ITVCCLGCAV ALYPFYRRV
101: RGRTVEVVDT SDILLDTDPG TLDRDLLKKK LETYKKAFPG LAILGWYSID THVTNTDMET NQALMDASGT TFYLLFNPAM NLSLKDLPVT IYEKVHSTNR
201: SPTPLIFVQG KYKTETVEAE RISLDHTCPV VSDVSVPPLV GKGQHANIMQ TSGFKLMLFE IPSGFAMFEV SQELIARPKD IWARFAYQDD ITNVIVTLGS
301: IQIHNKSVAR DIIVGPGDEL KEFILSFCTH NYLIVQDVEL KDVIEKKLNI YCYCNPTVVG ELTWGLNYVL HKLLPQEQSL THEPYLPLSK AMSKQIKEYG
401: FKISPREIDR EFLRAMSFLN YLGYMSERYS LLLDHLFGQY RKNNMSDIEF AKSIASHLHS SEGIVPRDER YTRAEIMEFI DFIIAAPENR SRTLSFLRRI
501: EAASIDDSPP PPSLPGGMGV SLLKRLRLDW ITVCCLGCAV ALYPFYRRV
001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM
Arabidopsis Description
CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.