CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX90073
CDY00413
CDY01302
CDY04768
CDY15130
CDY21400
CDY25761
CDY38053

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G26430.1	CDX90073	AT1G02090.1	11742986
AT4G26430.1	CDY00413	AT1G02090.1	11742986
AT4G26430.1	CDY01302	AT1G02090.1	11742986
AT4G26430.1	CDY15130	AT1G02090.1	11742986
AT4G26430.1	CDY38053	AT1G02090.1	11742986
AT4G26430.1	CDX90073	AT1G02090.1	21798944
AT4G26430.1	CDY00413	AT1G02090.1	21798944
AT4G26430.1	CDY01302	AT1G02090.1	21798944
AT4G26430.1	CDY15130	AT1G02090.1	21798944
AT4G26430.1	CDY38053	AT1G02090.1	21798944
AT4G26430.1	CDY04768	AT1G22920.1	11742986
AT4G26430.1	CDY21400	AT1G22920.1	11742986
AT4G26430.1	CDY25761	AT1G22920.1	11742986

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019106.1-P	Field mustard	plastid	98.11	98.11
CDX94336	Canola	plastid	86.16	86.16
CDX89337	Canola	plastid	85.22	85.22
AT4G26430.1	Thale cress	plastid	84.91	85.17
CDX92773	Canola	plastid	89.94	81.25
VIT_19s0015g01950.t01	Wine grape	plastid	77.36	77.6
CDY49389	Canola	plastid	77.36	77.36
CDY32798	Canola	plastid	76.1	77.07
Solyc10g005660.2.1	Tomato	plastid	73.9	75.08
GSMUA_Achr5P04140_001	Banana	plastid	72.33	74.43
KRH62556	Soybean	plastid	72.96	72.96
PGSC0003DMT400056930	Potato	cytosol, plastid	26.1	72.17
KRH56376	Soybean	plastid	72.64	71.74
Os08t0500000-01	Rice	plasma membrane	71.38	69.0
EES14305	Sorghum	plastid	70.44	67.47
TraesCS7D01G240300.1	Wheat	golgi, unclear	70.75	66.77
TraesCS7A01G241300.1	Wheat	plastid	70.75	66.77
Zm00001d031323_P001	Maize	extracellular	69.5	66.57
HORVU7Hr1G049190.1	Barley	plastid	70.44	66.47
TraesCS7B01G136800.1	Wheat	plastid	70.13	66.17
Zm00001d052848_P004	Maize	plastid	70.75	65.98
CDX74814	Canola	cytosol, plastid	22.33	24.57
CDY65775	Canola	cytosol, plastid	21.38	23.53
CDY60991	Canola	plastid	21.07	22.87
CDY24934	Canola	plastid	21.07	22.87
CDX70711	Canola	cytosol	8.81	22.05
CDY14102	Canola	cytosol	20.75	21.43
CDY11340	Canola	extracellular	20.75	21.43
CDY04967	Canola	cytosol	20.75	21.43
CDX98863	Canola	cytosol	20.75	21.43
CDX70129	Canola	cytosol, nucleus, vacuole	20.75	21.43
CDX80973	Canola	cytosol, nucleus, vacuole	20.75	21.43
CDY06213	Canola	cytosol	10.69	19.43
CDY17426	Canola	cytosol, nucleus, plastid	14.47	16.79
CDY04139	Canola	cytosol	14.47	16.31
CDX78706	Canola	cytosol	14.15	11.45

Protein Annotations

MapMan:19.2.3.3.1.6	Gene3D:3.40.140.10	UniProt:A0A078HXY7	EnsemblPlants:CDY42737	ProteinID:CDY42737	ProteinID:CDY42737.1
GO:GO:0000338	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006464	GO:GO:0008150	GO:GO:0008152	GO:GO:0008180
GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00075278001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN
InterPro:MPN_CSN6	PFAM:PF01398	PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF8
InterPro:Rpn11/EIF3F_C	SMART:SM00232	UniParc:UPI0004EEDB2D	:	:	:

Description

BnaA03g48020DBnaA03g48020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HXY7]

Coordinates

chrLK032533:-:36090..38487

Molecular Weight (calculated)

35171.2 Da

IEP (calculated)

6.908

GRAVY (calculated)

-0.082

Length

318 amino acids

Sequence
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPSSSCA AGNTPAAVGA TFPQNFRVYG CVIGAQRGRT VEIFNSFELV FDPTTDSLDR AFLEKKQELY
101: QKVFPGFYIL GWYSTGSEAN ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVDASYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLF QYLVAMQKGD IPCDNSLLRQ AAGLLRSLPA AHSEKFNDNF LMEYNDKLLM SYLAMITNCT SNMNEVVDKV
301: KTAYAKKIRT GGSRIPFM

Best Arabidopsis Sequence Match ( AT4G26430.1 )
(BLAST)

001: MAPSSSSGLT FKLHPLVMLN ISDHFTRVKT QLNPPAASCA TGNGSNNADA MLLQNPRVYG CVIGLQRGRT VEIFNSFELI FDPALDTLDR SFLEKKQELY
101: KKVFPDFYVL GWYSTGSDAT ESDMHIHKAL MDINESPVYV LLNPAINHAQ KDLPVTIYES EFHVIDGIPQ SIFVHTSYTI ETVEAERISV DHVAHLKPSD
201: GGSAATQLAA HLTGIHSAIK MLNSRIRVLY QHIVAMQKGD KPCENSVLRQ VSSLLRSLPA AESEKFNENF LMEYNDKLLM SYLAMITNCT SNMNEVVDKF
301: NTAYDKHSRR GGRTAFM

Arabidopsis Description

CSN6BCOP9 signalosome complex subunit 6b [Source:UniProtKB/Swiss-Prot;Acc:Q8W1P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.