CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX70129	Canola	cytosol, nucleus, vacuole	99.03	99.03
Bra009133.1-P	Field mustard	cytosol	99.03	99.03
CDX80973	Canola	cytosol, nucleus, vacuole	98.38	98.38
CDY14102	Canola	cytosol	98.05	98.05
CDY11340	Canola	extracellular	98.05	98.05
CDY04967	Canola	cytosol	98.05	98.05
EES11600	Sorghum	cytosol	90.58	90.0
HORVU2Hr1G110590.1	Barley	cytosol	90.26	89.68
TraesCS2A01G495800.1	Wheat	golgi, unclear	89.61	89.03
TraesCS2B01G524100.2	Wheat	cytosol	89.61	89.03
TraesCS2D01G496100.2	Wheat	cytosol	89.61	89.03
KRH31114	Soybean	endoplasmic reticulum	89.29	89.0
KRG97770	Soybean	nucleus	88.64	88.35
Zm00001d001966_P001	Maize	cytosol	90.58	87.46
GSMUA_Achr9P25620_001	Banana	cytosol	88.31	87.46
Solyc01g008370.2.1	Tomato	nucleus	87.66	87.1
PGSC0003DMT400042160	Potato	cytosol	87.66	87.1
GSMUA_Achr8P20510_001	Banana	cytosol	87.01	86.45
Zm00001d026517_P001	Maize	cytosol, nucleus, plasma membrane	85.71	79.76
Os04t0661900-01	Rice	cytosol	43.83	79.41
VIT_07s0005g03000.t01	Wine grape	nucleus	21.43	68.04
VIT_03s0017g00150.t01	Wine grape	nucleus	20.78	65.98
HORVU4Hr1G012380.1	Barley	cytosol	18.83	61.7
KRG89488	Soybean	cytosol	41.88	48.13
CDY17426	Canola	cytosol, nucleus, plastid	40.91	45.99
CDY04139	Canola	cytosol	41.88	45.74
CDX70711	Canola	cytosol	16.88	40.94
CDY06213	Canola	cytosol	19.48	34.29
CDX78706	Canola	cytosol	37.34	29.26
CDX74814	Canola	cytosol, plastid	23.38	24.91
CDY65775	Canola	cytosol, plastid	23.05	24.57
CDY24934	Canola	plastid	22.73	23.89
CDY60991	Canola	plastid	22.4	23.55
CDY32798	Canola	plastid	22.08	21.66
CDX94336	Canola	plastid	22.08	21.38
CDY49389	Canola	plastid	22.08	21.38
CDX89337	Canola	plastid	21.75	21.07
CDY42737	Canola	plastid	21.43	20.75
CDX92773	Canola	plastid	22.73	19.89

Protein Annotations

MapMan:19.2.6.2.2.7	Gene3D:3.40.140.10	EnsemblPlants:CDX98863	ProteinID:CDX98863	ProteinID:CDX98863.1	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005838
EnsemblPlantsGene:GSBRNA2T00106966001	InterPro:IPR037518	InterPro:JAMM/MPN+_dom	InterPro:MPN	InterPro:MPN_RPN7_8	PFAM:PF01398
PFAM:PF13012	PFscan:PS50249	PANTHER:PTHR10540	PANTHER:PTHR10540:SF7	InterPro:Rpn11/EIF3F_C	SMART:SM00232
UniParc:UPI0004EB2A0B	SEG:seg	:	:	:	:

Description

BnaC09g49720D

Coordinates

chrLK031907:+:329976..332894

Molecular Weight (calculated)

34842.1 Da

IEP (calculated)

6.636

GRAVY (calculated)

-0.087

Length

308 amino acids

Sequence
(BLAST)

001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSRK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDR DPSIWFLDHN YHESMFHMFK RINAKEHVIG
101: WYSTGPKLRE NDLDVHALFS GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ KVFVHVSTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRSYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFSVK TNDMMLVIYL SSLIRSVIAL HNLINNKLLN KEHEKAEDSK
301: PVAIPISS

Best Arabidopsis Sequence Match ( AT3G11270.1 )
(BLAST)

001: MDVIKTQQIS ARTIEKVIVH PLVLLSIVDH YNRVAKDTSK RVVGVLLGSS SRGTVDVTNS YAVPFEEDDK DTSIWFLDHN YHESMFHMFK RINAKEHIVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE VKENATQKSQ QVFVHVPTEI AAHEVEEIGV EHLLRDVKDT TISTLATEVT
201: AKLTALKGLD ARLREIRTYL DLVIEGKLPL NHEILYHLQD VFNLLPNLNV NELVKAFAVK TNDMMLVIYL SSLIRSVIAL HSLINNKLLN KEHEKAEDSK
301: PVDIPLITES

Arabidopsis Description

RPN8B26S proteasome non-ATPase regulatory subunit 7 homolog B [Source:UniProtKB/Swiss-Prot;Acc:Q9C774]
SUBAcon: [endoplasmic reticulum,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.