Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G05780.1 | CDX83563 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY04184 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY13593 | AT3G25860.1 | 24846764 |
| AT5G05780.1 | CDY39183 | AT3G25860.1 | 24846764 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_03s0017g00150.t01 | Wine grape | nucleus | 24.41 | 31.96 |
| VIT_07s0005g03000.t01 | Wine grape | nucleus | 23.62 | 30.93 |
| Os04t0661900-01 | Rice | cytosol | 26.77 | 20.0 |
| CDX78706 | Canola | cytosol | 61.42 | 19.85 |
| AT5G05780.1 | Thale cress | cytosol | 41.73 | 17.21 |
| CDY14102 | Canola | cytosol | 41.73 | 17.21 |
| CDY11340 | Canola | extracellular | 41.73 | 17.21 |
| CDY04967 | Canola | cytosol | 41.73 | 17.21 |
| CDX80973 | Canola | cytosol, nucleus, vacuole | 41.73 | 17.21 |
| CDX70129 | Canola | cytosol, nucleus, vacuole | 41.73 | 17.21 |
| CDY17426 | Canola | cytosol, nucleus, plastid | 37.01 | 17.15 |
| HORVU4Hr1G012380.1 | Barley | cytosol | 12.6 | 17.02 |
| CDX98863 | Canola | cytosol | 40.94 | 16.88 |
| AT3G11270.1 | Thale cress | cytosol, endoplasmic reticulum, nucleus | 40.94 | 16.77 |
| EES11600 | Sorghum | cytosol | 40.94 | 16.77 |
| TraesCS2D01G496100.2 | Wheat | cytosol | 40.16 | 16.45 |
| TraesCS2B01G524100.2 | Wheat | cytosol | 40.16 | 16.45 |
| TraesCS2A01G495800.1 | Wheat | golgi, unclear | 40.16 | 16.45 |
| HORVU2Hr1G110590.1 | Barley | cytosol | 40.16 | 16.45 |
| KRG89488 | Soybean | cytosol | 34.65 | 16.42 |
| Zm00001d001966_P001 | Maize | cytosol | 40.94 | 16.3 |
| KRG97770 | Soybean | nucleus | 39.37 | 16.18 |
| KRH31114 | Soybean | endoplasmic reticulum | 39.37 | 16.18 |
| GSMUA_Achr8P20510_001 | Banana | cytosol | 39.37 | 16.13 |
| PGSC0003DMT400042160 | Potato | cytosol | 39.37 | 16.13 |
| GSMUA_Achr9P25620_001 | Banana | cytosol | 39.37 | 16.08 |
| CDY04139 | Canola | cytosol | 35.43 | 15.96 |
| Solyc01g008370.2.1 | Tomato | nucleus | 38.58 | 15.81 |
| Zm00001d026517_P001 | Maize | cytosol, nucleus, plasma membrane | 40.94 | 15.71 |
| CDX94336 | Canola | plastid | 22.83 | 9.12 |
| CDY42737 | Canola | plastid | 22.05 | 8.81 |
| CDX89337 | Canola | plastid | 22.05 | 8.81 |
| CDY06213 | Canola | cytosol | 11.81 | 8.57 |
| CDY32798 | Canola | plastid | 19.68 | 7.96 |
| CDY49389 | Canola | plastid | 19.68 | 7.86 |
| CDX92773 | Canola | plastid | 21.26 | 7.67 |
| CDY60991 | Canola | plastid | 16.54 | 7.17 |
| CDY65775 | Canola | cytosol, plastid | 15.75 | 6.92 |
| CDY24934 | Canola | plastid | 15.75 | 6.83 |
| CDX74814 | Canola | cytosol, plastid | 14.96 | 6.57 |
Protein Annotations
| EnsemblPlants:CDX70711 | EnsemblPlantsGene:GSBRNA2T00140576001 | Gene3D:3.40.140.10 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005838 | InterPro:MPN_RPN7_8 | PANTHER:PTHR10540 | PANTHER:PTHR10540:SF7 | ProteinID:CDX70711 | ProteinID:CDX70711.1 |
| UniParc:UPI0004EEB596 | MapMan:35.1 | : | : | : | : |
Description
BnaC03g07950D
Coordinates
chrLK031791:+:1657226..1657993
Molecular Weight (calculated)
14442.1 Da
IEP (calculated)
4.305
GRAVY (calculated)
-0.198
Length
127 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQLFHGIND MVGWYSTGPE LRDNDLDVHA QFCHYAPYPV LVVINVGLGI PTNSYYTMSS LEKIEKEVFV RASVEIAPHE VKEDSGEEHL LCEFQDTTTE
101: IAPKRMTLGG VSFVDAMESY MDFYKNQ
101: IAPKRMTLGG VSFVDAMESY MDFYKNQ
001: MDVIKTQQIS ARTIEKVVVH PLVLLSIVDH YNRVAKDSSK RVVGVLLGSS SRGVVDVTNS YAVPFEEDDK DPSIWFLDHN YHESMFHMFK RINAKEHVVG
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE NATQKSQKVF VHVSTEIAAH EVEEIGVEHL LRDVKDTTIS TLATEVTAKL
201: TALKGLDARL REIRSYLDLV IEGKLPLNHE ILYHLQDVFN LLPNLNVNEL VKAFSVKTND MMLVIYLSSL IRSVIALHNL INNKLLNKEH EKAEDSKPVA
301: IPATS
101: WYSTGPKLRE NDLDVHALFN GYVPNPVLVI IDVQPKELGI PTKAYYAVEE NATQKSQKVF VHVSTEIAAH EVEEIGVEHL LRDVKDTTIS TLATEVTAKL
201: TALKGLDARL REIRSYLDLV IEGKLPLNHE ILYHLQDVFN LLPNLNVNEL VKAFSVKTND MMLVIYLSSL IRSVIALHNL INNKLLNKEH EKAEDSKPVA
301: IPATS
Arabidopsis Description
RPN8A26S proteasome non-ATPase regulatory subunit 7 homolog A [Source:UniProtKB/Swiss-Prot;Acc:O24412]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.