CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX87410
CDX88503
CDX99773
CDY03145
CDY12039
CDY33125
CDY46498

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G25860.1	CDY03145	AT1G34430.1	21798944
AT3G25860.1	CDY12039	AT1G34430.1	21798944
AT3G25860.1	CDX87410	AT1G79070.1	21798944
AT3G25860.1	CDX88503	AT1G79070.1	21798944
AT3G25860.1	CDX99773	AT3G25545.1	21798944
AT3G25860.1	CDY33125	AT3G25545.1	21798944
AT3G25860.1	CDY46498	AT3G25545.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra025167.1-P	Field mustard	plastid	99.16	99.16
CDX83563	Canola	plastid	96.65	96.85
CDY39183	Canola	plastid	92.24	93.22
CDY04184	Canola	plastid	93.29	92.9
AT3G25860.1	Thale cress	plastid	92.45	91.88
GSMUA_Achr3P07350_001	Banana	cytosol	65.41	76.66
Solyc05g009530.2.1	Tomato	plastid	72.12	74.95
VIT_01s0011g03380.t01	Wine grape	plastid	76.1	74.39
PGSC0003DMT400033754	Potato	plastid	70.86	73.48
KRH75381	Soybean	plastid	65.62	73.3
KRG90801	Soybean	endoplasmic reticulum, nucleus	73.58	69.37
TraesCS5B01G489600.1	Wheat	golgi	68.76	69.05
TraesCS5A01G476700.1	Wheat	plastid	68.55	68.99
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	67.92	68.35
Os08t0431300-01	Rice	plastid	67.3	67.58
Zm00001d032224_P001	Maize	plastid	66.25	67.09
EES15031	Sorghum	plastid	66.25	66.53
TraesCS5D01G212800.1	Wheat	plastid	64.57	66.52
HORVU5Hr1G061140.1	Barley	plastid	64.57	66.52
TraesCS3B01G372900.1	Wheat	plastid	63.31	66.52
TraesCS5B01G204800.1	Wheat	plastid	63.73	65.66
OQU89472	Sorghum	plastid	62.89	65.36
Zm00001d020426_P001	Maize	plastid	62.05	65.2
CDY12039	Canola	plastid	60.38	64.0
CDY03145	Canola	plastid	60.59	63.38
Os09t0408600-01	Rice	plastid	63.94	60.88
Zm00001d050383_P001	Maize	plastid	65.62	59.96
TraesCS5A01G206600.2	Wheat	plastid	57.86	59.48
HORVU5Hr1G112850.3	Barley	plastid	65.62	58.4
CDX73652	Canola	mitochondrion	13.63	34.76
CDX82504	Canola	plastid	32.29	28.62
CDY33075	Canola	mitochondrion, plastid	32.7	28.11
CDY24058	Canola	mitochondrion	32.29	27.75
CDY55206	Canola	mitochondrion	29.77	27.73
CDX97529	Canola	mitochondrion	32.49	27.58
CDX75740	Canola	mitochondrion, plastid	32.29	27.45
CDX74077	Canola	mitochondrion, plastid	23.9	23.85
CDY08029	Canola	mitochondrion	24.11	23.71
CDX95323	Canola	mitochondrion	28.93	21.53
CDY17300	Canola	mitochondrion	20.13	20.6
CDY23198	Canola	mitochondrion	7.76	20.44
CDY20790	Canola	mitochondrion	19.92	20.43
CDY06613	Canola	mitochondrion	19.92	20.39
CDY19918	Canola	mitochondrion	19.71	20.26
CDY23199	Canola	mitochondrion, plastid	28.93	20.03
CDY31217	Canola	mitochondrion, plastid	19.71	19.54
CDY21016	Canola	mitochondrion, plastid	19.29	19.33
CDY34925	Canola	mitochondrion	10.06	18.68
CDY12012	Canola	plastid	20.13	18.39
CDY36727	Canola	plastid	20.34	18.13
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
GO:A0A078FMN3	UniProt:A0A078FMN3	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY13593	ProteinID:CDY13593
ProteinID:CDY13593.1	ncoils:Coil	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:GSBRNA2T00078001001	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189
PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF75	SUPFAM:SSF47005
SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004EEAB95	SEG:seg	:

Description

BnaA06g33300DDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A078FMN3]

Coordinates

chrLK032037:+:151206..153359

Molecular Weight (calculated)

49584.5 Da

IEP (calculated)

9.474

GRAVY (calculated)

0.018

Length

477 amino acids

Sequence
(BLAST)

001: MALSSSSFLS TPSLPNSKST ISFASSVSPA PIPSLRRVVF RSHRREMTVR SKIREIFMPA LSSTMTEGKI VSWLKTEGEK LAKGQSVVVV ESDKADMDVE
101: TFYDGYLAAI VVGEGETAPV GAAIGLLAET EAEIEEAKSK AASKSSSAAV APSPPPPATS SPAPAISQPA PVAAGSDGPR KTVATPYAKK LAKQHKVDIG
201: SVAGTGPFGR ITASDVEAAA GIAPSVAPPP PPPAASPTAT TAKATTTSSP PLLPDSSVVP FTAMQSAVSK NMIESLSVPT FRVGYPVNTD ALDALYEKVK
301: PKGVTMTALL AKAAGMALAQ HPVVNASCKD GKSFSYNSNI NIAVAVAING GLITPVLQDA DKLDLYLLSQ KWKELVGKAR SKQLQPHEYN SGTFTLSNLG
401: MFGVDRFDAI LPPGQGAIMA VGASKPTVVA DKDGFFSVKN KMMVNVTADH RIVYGADLAA FLQTFAKIVE NPDSLTL

Best Arabidopsis Sequence Match ( AT3G25860.1 )
(BLAST)

001: MAVSSSSFLS TASLTNSKSN ISFASSVSPS LRSVVFRSTT PATSHRRSMT VRSKIREIFM PALSSTMTEG KIVSWIKTEG EKLAKGESVV VVESDKADMD
101: VETFYDGYLA AIVVGEGETA PVGAAIGLLA ETEAEIEEAK SKAASKSSSS VAEAVVPSPP PVTSSPAPAI AQPAPVTAVS DGPRKTVATP YAKKLAKQHK
201: VDIESVAGTG PFGRITASDV ETAAGIAPSK SSIAPPPPPP PPVTAKATTT NLPPLLPDSS IVPFTAMQSA VSKNMIESLS VPTFRVGYPV NTDALDALYE
301: KVKPKGVTMT ALLAKAAGMA LAQHPVVNAS CKDGKSFSYN SSINIAVAVA INGGLITPVL QDADKLDLYL LSQKWKELVG KARSKQLQPH EYNSGTFTLS
401: NLGMFGVDRF DAILPPGQGA IMAVGASKPT VVADKDGFFS VKNTMLVNVT ADHRIVYGAD LAAFLQTFAK IIENPDSLTL

Arabidopsis Description

LTA2Dihydrolipoyllysine-residue acetyltransferase component 4 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SQI8]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.