CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 7

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX95323	Canola	mitochondrion	90.61	25.59
CDY23199	Canola	mitochondrion, plastid	88.95	23.37
CDX73652	Canola	mitochondrion	14.92	14.44
CDY33075	Canola	mitochondrion, plastid	41.44	13.51
CDY24058	Canola	mitochondrion	40.88	13.33
CDX82504	Canola	plastid	37.02	12.45
CDX97529	Canola	mitochondrion	37.57	12.1
CDX75740	Canola	mitochondrion, plastid	37.02	11.94
CDY55206	Canola	mitochondrion	33.7	11.91
CDY34925	Canola	mitochondrion	12.15	8.56
CDY21016	Canola	mitochondrion, plastid	22.1	8.4
CDY31217	Canola	mitochondrion, plastid	22.1	8.32
CDY17300	Canola	mitochondrion	20.99	8.15
CDY12039	Canola	plastid	19.89	8.0
CDY19918	Canola	mitochondrion	20.44	7.97
CDY20790	Canola	mitochondrion	20.44	7.96
CDY06613	Canola	mitochondrion	20.44	7.94
CDY03145	Canola	plastid	19.89	7.89
CDX83563	Canola	plastid	20.44	7.77
CDY13593	Canola	plastid	20.44	7.76
CDX74077	Canola	mitochondrion, plastid	20.44	7.74
CDY08029	Canola	mitochondrion	20.44	7.63
CDY39183	Canola	plastid	19.89	7.63
CDY04184	Canola	plastid	19.89	7.52
CDY12012	Canola	plastid	20.44	7.09
CDY36727	Canola	plastid	20.44	6.92
CDY69187	Canola	cytosol, nucleus	2.21	0.63
CDY17299	Canola	cytosol, plastid	2.21	0.6

Protein Annotations

EnsemblPlants:CDY23198	EnsemblPlantsGene:GSBRNA2T00021737001	Gene3D:2.40.50.100	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:Biotin_lipoyl	InterPro:IPR000089
InterPro:Single_hybrid_motif	PANTHER:PTHR23151	PFAM:PF00364	PFscan:PS50968	ProteinID:CDY23198	ProteinID:CDY23198.1
ScanProsite:PS00189	SEG:seg	SUPFAM:SSF51230	UniParc:UPI0004EDD502	UniProt:A0A078GEZ9	MapMan:50.2.3

Description

BnaA04g05610DBnaA04g05610D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GEZ9]

Coordinates

chrLK032141:+:288380..290136

Molecular Weight (calculated)

19783.0 Da

IEP (calculated)

8.117

GRAVY (calculated)

-0.004

Length

181 amino acids

Sequence
(BLAST)

001: MVLPLLRHAA IARTCSLLRA RLLAPASGFH TRFSNGLCHS DDKISSSHGA SFRSASIDMI TRMDNSHPTS ILRFGMRNFS SSGTTPQTVL TMPALSPTMS
101: HGNIAKWLKK EGDKVEVGDV LCEIETDKAT VELESQEEGF LAKIVVTEGS KDIPVNAPIA IMVSTIAVEF ILENIVRFRN R

Best Arabidopsis Sequence Match ( AT3G52200.1 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST GPISQTVLAM PALSPTMSHG
101: NVVKWMKKEG DKVEVGDVLC EIETDKATVE FESQEEGFLA KILVTEGSKD IPVNEPIAIM VEEEDDIKNV PATIEGGRDG KEETSAHQVM KPDESTQQKS
201: SIQPDASDLP PHVVLEMPAL SPTMNQGNIA KWWKKEGDKI EVGDVIGEIE TDKATLEFES LEEGYLAKIL IPEGSKDVAV GKPIALIVED AESIEAIKSS
301: SAGSSEVDTV KEVPDSVVDK PTERKAGFTK ISPAAKLLIL EHGLEASSIE ASGPYGTLLK SDVVAAIASG KASKSSASTK KKQPSKETPS KSSSTSKPSV
401: TQSDNNYEDF PNSQIRKIIA KRLLESKQKI PHLYLQSDVV LDPLLAFRKE LQENHGVKVS VNDIVIKAVA VALRNVRQAN AFWDAEKGDI VMCDSVDISI
501: AVATEKGLMT PIIKNADQKS ISAISLEVKE LAQKARSGKL APHEFQGGTF SISNLGMYPV DNFCAIINPP QAGILAVGRG NKVVEPVIGL DGIEKPSVVT
601: KMNVTLSADH RIFDGQVGAS FMSELRSNFE DVRRLLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.