CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 1
mitochondrion 7

Predictors

GFP

MS/MS

Papers

plastid: 25255860

msms PMID: 25255860 doi

RK Tewari, M Satoh, S Kado, K Mishina, M Anma, K Enami, M Hanaoka, M Watanabe

Laboratory of Plant Nutrition, Faculty of Horticulture, Chiba University, 648 Matsudo, Chiba, 271-8510, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra033446.1-P	Field mustard	mitochondrion	92.74	99.69
CDX95323	Canola	mitochondrion	91.44	98.28
CDY23198	Canola	mitochondrion	23.37	88.95
CDX73652	Canola	mitochondrion	22.79	83.96
AT3G52200.2	Thale cress	mitochondrion	83.45	80.65
KRG92074	Soybean	cytosol, mitochondrion	12.48	78.18
TraesCS7A01G305100.1	Wheat	mitochondrion	41.65	64.93
TraesCS7B01G205500.1	Wheat	mitochondrion	41.36	64.48
VIT_13s0074g00150.t01	Wine grape	mitochondrion	59.36	64.31
Os06t0499900-01	Rice	mitochondrion	42.96	61.16
GSMUA_AchrUn_...	Banana	mitochondrion	43.25	60.2
KXG37311	Sorghum	mitochondrion	42.09	59.92
Solyc11g007720.1.1	Tomato	nucleus, unclear	55.59	59.47
Zm00001d034531_P001	Maize	mitochondrion	42.53	59.43
KRG92075	Soybean	mitochondrion	43.83	58.3
TraesCS7D01G301900.1	Wheat	golgi	43.25	56.87
KRH34708	Soybean	mitochondrion	55.44	56.51
HORVU7Hr1G072650.1	Barley	mitochondrion	42.96	56.49
CDY33075	Canola	mitochondrion, plastid	30.62	38.02
CDX82504	Canola	plastid	29.17	37.36
CDY55206	Canola	mitochondrion	27.72	37.3
CDY24058	Canola	mitochondrion	30.04	37.3
CDX75740	Canola	mitochondrion, plastid	30.33	37.25
CDX97529	Canola	mitochondrion	30.19	37.01
CDX83563	Canola	plastid	20.17	29.2
CDY39183	Canola	plastid	19.88	29.03
CDY03145	Canola	plastid	19.16	28.95
CDY13593	Canola	plastid	20.03	28.93
CDY12039	Canola	plastid	18.87	28.89
CDY04184	Canola	plastid	19.74	28.39
CDY20790	Canola	mitochondrion	18.14	26.88
CDY06613	Canola	mitochondrion	18.14	26.82
CDY17300	Canola	mitochondrion	18.14	26.82
CDY21016	Canola	mitochondrion, plastid	18.43	26.68
CDY31217	Canola	mitochondrion, plastid	18.58	26.61
CDY19918	Canola	mitochondrion	17.71	26.29
CDX74077	Canola	mitochondrion, plastid	16.84	24.27
CDY12012	Canola	plastid	18.0	23.75
CDY08029	Canola	mitochondrion	16.69	23.71
CDY36727	Canola	plastid	18.14	23.36
CDY34925	Canola	mitochondrion	5.95	15.95
CDY69187	Canola	cytosol, nucleus	0.58	0.63
CDY17299	Canola	cytosol, plastid	0.58	0.6

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10
GO:A0A078GCX3	UniProt:A0A078GCX3	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	EnsemblPlants:CDY23199	ProteinID:CDY23199
ProteinID:CDY23199.1	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150	GO:GO:0008152
GO:GO:0016740	GO:GO:0016746	EnsemblPlantsGene:GSBRNA2T00021738001	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF9	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI0004EECCC5	SEG:seg	:	:

Description

BnaA04g05600DDihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A078GCX3]

Coordinates

chrLK032141:+:290962..297598

Molecular Weight (calculated)

74536.4 Da

IEP (calculated)

5.704

GRAVY (calculated)

-0.173

Length

689 amino acids

Sequence
(BLAST)

001: MVLPLLRHAA IARTCSLLRA RLLAPASGFH TRFSNGVYHS DDKISSSHGA SFRPASIDMI TRMDNSHPTS ILRFGMRNFS STGIHRLFLH MISTIELLNP
101: NYLKVKKDML VEADAKLLIT LFFDVCASIL RPTPQTVLTM PALSPTMSHG NIAKWLKKEG DKVEVGDVLC EIETDKATVE LESQEEGFLA KIVVTEGSKD
201: IPVNAPIAIM VEEEDDIQNV SAVEGGQVGK EETSAPQEMK SEESTQQRDS IQPDASDLPP HVVLEMPALS PTMNQGNIAK WWKKEGDKIE VGDVIGEIET
301: DKATLEFESL EEGYLAKILI PEGSKDVAVG KPIALIVEDA ESIEAIKSSS AGGSEAVTEK QAPQSVADKS GGKKAGFTKI SPAAKLLILE HGLEASSIEA
401: SGPYGTLLKS DVVAAIASGK TSKKSVSTEK KQPSKENISK SSSVSRPESK SSVTPSNDYE DFPNSQIRKI IAKRLLESKQ KIPHLYLSSD VVLDPLLAFR
501: KELQENHGVK VSVNDIVIKA VAVALRNVRQ ANAFWDAEKG EIVLCEDVDI SVAVATEKGL MTPIIRNADQ KSISAISSEV KELAQKARSG KLAPHEFQGG
601: TFSISNLGMY PVDQFCAIIN PPQAGILAVG RGNKVVEAIL GIDGTEKPSV VTKMNVTLSA DHRIFDGQVG ASFLSELRSN FEDVRRLLL

Best Arabidopsis Sequence Match ( AT3G52200.2 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST AIRLTNTDVK WVIRIINGNF
101: RLTCRKIEML IDAGAKTSIS LFSLMFVLPS YLRYSDRRCN QLYKILPLNY YFLWVVGPIS QTVLAMPALS PTMSHGNVVK WMKKEGDKVE VGDVLCEIET
201: DKATVEFESQ EEGFLAKILV TEGSKDIPVN EPIAIMVEEE DDIKNVPATI EGGRDGKEET SAHQVMKPDE STQQKSSIQP DASDLPPHVV LEMPALSPTM
301: NQGNIAKWWK KEGDKIEVGD VIGEIETDKA TLEFESLEEG YLAKILIPEG SKDVAVGKPI ALIVEDAESI EAIKSSSAGS SEVDTVKEVP DSVVDKPTER
401: KAGFTKISPA AKLLILEHGL EASSIEASGP YGTLLKSDVV AAIASGKASK SSASTKKKQP SKETPSKSSS TSKPSVTQSD NNYEDFPNSQ IRKIIAKRLL
501: ESKQKIPHLY LQSDVVLDPL LAFRKELQEN HGVKVSVNDI VIKAVAVALR NVRQANAFWD AEKGDIVMCD SVDISIAVAT EKGLMTPIIK NADQKSISAI
601: SLEVKELAQK ARSGKLAPHE FQGGTFSISN LGMYPVDNFC AIINPPQAGI LAVGRGNKVV EPVIGLDGIE KPSVVTKMNV TLSADHRIFD GQVGASFMSE
701: LRSNFEDVRR LLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.