Factsheet for VIT_13s0074g00150.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 9

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92074	Soybean	cytosol, mitochondrion	15.09	87.27
TraesCS7A01G305100.1	Wheat	mitochondrion	49.69	71.49
TraesCS7B01G205500.1	Wheat	mitochondrion	49.37	71.04
Solyc11g007720.1.1	Tomato	nucleus, unclear	71.38	70.5
KRG92075	Soybean	mitochondrion	55.97	68.73
Os06t0499900-01	Rice	mitochondrion	51.89	68.18
KXG37311	Sorghum	mitochondrion	51.89	68.18
Zm00001d034531_P001	Maize	mitochondrion	51.89	66.94
CDX73652	Canola	mitochondrion	19.65	66.84
KRH34708	Soybean	mitochondrion	70.13	65.98
GSMUA_AchrUn_...	Banana	mitochondrion	51.26	65.86
Bra033446.1-P	Field mustard	mitochondrion	64.31	63.81
CDX95323	Canola	mitochondrion	64.31	63.81
TraesCS7D01G301900.1	Wheat	golgi	51.42	62.4
HORVU7Hr1G072650.1	Barley	mitochondrion	51.26	62.21
CDY23199	Canola	mitochondrion, plastid	64.31	59.36
AT3G52200.2	Thale cress	mitochondrion	63.68	56.8
Bra006910.1-P	Field mustard	mitochondrion	58.02	50.55
VIT_09s0002g01800.t01	Wine grape	mitochondrion	32.7	37.48
VIT_11s0016g01870.t01	Wine grape	mitochondrion	31.92	37.11
VIT_18s0072g01000.t01	Wine grape	plastid	21.38	28.51
VIT_01s0011g03380.t01	Wine grape	plastid	21.38	27.87
VIT_10s0116g01480.t01	Wine grape	mitochondrion	20.13	27.06
VIT_19s0090g00750.t01	Wine grape	cytosol	16.67	27.04
VIT_05s0077g02080.t01	Wine grape	cytosol	17.3	23.76

Protein Annotations

EntrezGene:100243846	wikigene:100243846	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2	Gene3D:2.40.50.100
Gene3D:3.30.559.10	Gene3D:4.10.320.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	ProteinID:CCB62310	ProteinID:CCB62310.1
InterPro:E3-bd_dom_sf	UniProt:F6I5U2	EMBL:FN596753	GO:GO:0003674	GO:GO:0003824	GO:GO:0008150
GO:GO:0008152	GO:GO:0016740	GO:GO:0016746	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213
InterPro:IPR036625	EntrezGene:LOC100243846	wikigene:LOC100243846	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817
ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR23151	PANTHER:PTHR23151:SF9
SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	UniParc:UPI000210A288	ArrayExpress:VIT_13s0074g00150
EnsemblPlantsGene:VIT_13s0074g00150	EnsemblPlants:VIT_13s0074g00150.t01	unigene:Vvi.22682	RefSeq:XP_002262782	RefSeq:XP_002262782.2	SEG:seg

Description

Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F6I5U2]

Coordinates

chr13:+:7508568..7525863

Molecular Weight (calculated)

68354.9 Da

IEP (calculated)

6.325

GRAVY (calculated)

-0.271

Length

636 amino acids

Sequence
(BLAST)

001: MALSRLRHPI VSRAPSLFRA RILSSTASRS LPHTSTVQKS SVDGDGTLLR PASLLMVPRV QDGSSKLKLQ VGVRNFSSAE LPSHMVLGMP ALSPTMTQGN
101: IAKWRKKEGD KIEPGDVLCE IETDKATLEF ESLEEGFLAK ILVAEGSKDV PVGQPIAITV EDEEDIQKVP ASVAGGSGVE EKKSKHENAG NEDKQQEMSS
201: TINTAELPPH IVLGMPALSP TMNQGNIAKW RKKEGDKIEV GDVICEIETD KATLEFESLE EGYLAKIVAP EGSKDVAVGQ PIAITVEDPD DIEIVKASVS
301: SGSDIKKEKP QQQESRNEVR AEKSSFTRIS PSAKLLITEF GLDASTLKAS GPRGTLLKGD VLAAIKAGIG SSSSSSKDKM PPPPVHSQAS PSASPERSHL
401: QQSESFEDMP NSQIRKVIAT RLLESKQNTP HLYLSSDVIL DPLLSFRKEL KEKHDVKVSV NDIVIKAVAM ALKNVPEANA YWNAEKGEVI LSDSVDISIA
501: VATEKGLMTP IVRNADQKTI SSISIEVKEL AEKARAGKLK PNEFQGGTFS ISNLGMFPVD HFCAIINPPQ SGILAVGRGN KVVEPVVGGD GLEKPAVVTK
601: MNLTLSADHR VFDGKVGGAF LSALRSNFSD IRRLLL

Best Arabidopsis Sequence Match ( AT3G52200.1 )
(BLAST)

001: MVLPLFRRAA IARTSSLLRA RLFAPASEFH SRFSNGLYHL DDKISSSNGV RSASIDLITR MDDSSPKPIL RFGVQNFSST GPISQTVLAM PALSPTMSHG
101: NVVKWMKKEG DKVEVGDVLC EIETDKATVE FESQEEGFLA KILVTEGSKD IPVNEPIAIM VEEEDDIKNV PATIEGGRDG KEETSAHQVM KPDESTQQKS
201: SIQPDASDLP PHVVLEMPAL SPTMNQGNIA KWWKKEGDKI EVGDVIGEIE TDKATLEFES LEEGYLAKIL IPEGSKDVAV GKPIALIVED AESIEAIKSS
301: SAGSSEVDTV KEVPDSVVDK PTERKAGFTK ISPAAKLLIL EHGLEASSIE ASGPYGTLLK SDVVAAIASG KASKSSASTK KKQPSKETPS KSSSTSKPSV
401: TQSDNNYEDF PNSQIRKIIA KRLLESKQKI PHLYLQSDVV LDPLLAFRKE LQENHGVKVS VNDIVIKAVA VALRNVRQAN AFWDAEKGDI VMCDSVDISI
501: AVATEKGLMT PIIKNADQKS ISAISLEVKE LAQKARSGKL APHEFQGGTF SISNLGMYPV DNFCAIINPP QAGILAVGRG NKVVEPVIGL DGIEKPSVVT
601: KMNVTLSADH RIFDGQVGAS FMSELRSNFE DVRRLLL

Arabidopsis Description

LTA3Dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:F4J5T2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.