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Canola
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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 5
  • mitochondrion 3
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
MultiLoc:plastid
Predotar:mitochondrion
PProwler:mitochondrion
TargetP:plastid
WoLF PSORT:plastid
YLoc:mitochondrion
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX75740 mitochondrion
CDX82504 mitochondrion
CDX97529 mitochondrion
CDY55206 mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G13930.1 CDX75740 AT3G13930.1 24846799
AT3G13930.1 CDX82504 AT3G13930.1 24846799
AT3G13930.1 CDX97529 AT3G13930.1 24846799
AT3G13930.1 CDY55206 AT3G13930.1 24846799
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Bra001531.1-P Field mustard mitochondrion, plastid 82.34 95.06
CDX75740 Canola mitochondrion, plastid 96.47 92.51
CDY55206 Canola mitochondrion 86.06 90.43
CDX97529 Canola mitochondrion 91.82 87.9
AT3G13930.1 Thale cress mitochondrion 86.62 86.46
CDY33075 Canola mitochondrion, plastid 78.07 75.68
CDY24058 Canola mitochondrion 76.95 74.59
VIT_09s0002g01800.t01 Wine grape mitochondrion 67.47 65.41
VIT_11s0016g01870.t01 Wine grape mitochondrion 66.17 65.08
KRH47526 Soybean mitochondrion 65.8 64.72
KRH06095 Soybean mitochondrion 65.61 64.53
PGSC0003DMT400048225 Potato mitochondrion 65.61 63.95
Solyc07g006790.2.1 Tomato plastid 65.43 63.65
HORVU6Hr1G003770.1 Barley cytosol, mitochondrion 61.52 61.98
EES04754 Sorghum mitochondrion 61.71 61.6
TraesCS6D01G024400.1 Wheat golgi, mitochondrion 61.9 61.44
TraesCS6B01G028600.1 Wheat mitochondrion 60.59 61.28
TraesCS6A01G022600.2 Wheat golgi 61.15 61.15
Os06t0105400-02 Rice mitochondrion 61.71 60.36
TraesCS4A01G481800.3 Wheat mitochondrion, unclear 60.04 59.93
TraesCS7D01G011600.1 Wheat golgi, mitochondrion 60.22 59.89
Os07t0410100-01 Rice mitochondrion 59.85 59.52
Zm00001d053580_P002 Maize mitochondrion 60.59 59.17
TraesCS7A01G014600.4 Wheat golgi, mitochondrion 59.48 59.15
Os02t0105200-01 Rice mitochondrion 60.22 59.12
HORVU7Hr1G001330.9 Barley plastid 60.22 56.15
Zm00001d016365_P002 Maize mitochondrion 62.08 54.13
GSMUA_Achr10P... Banana mitochondrion, vacuole 61.9 52.44
CDX73652 Canola mitochondrion 13.38 38.5
CDY23198 Canola mitochondrion 12.45 37.02
CDY03145 Canola plastid 28.25 33.33
CDY12039 Canola plastid 27.7 33.11
CDY39183 Canola plastid 28.44 32.42
CDY04184 Canola plastid 28.81 32.36
CDY13593 Canola plastid 28.62 32.29
CDX83563 Canola plastid 28.44 32.14
CDX95323 Canola mitochondrion 36.99 31.05
CDY23199 Canola mitochondrion, plastid 37.36 29.17
CDY06613 Canola mitochondrion 23.23 26.82
CDY17300 Canola mitochondrion 23.05 26.61
CDX74077 Canola mitochondrion, plastid 23.61 26.57
CDY20790 Canola mitochondrion 22.86 26.45
CDY19918 Canola mitochondrion 22.68 26.29
CDY08029 Canola mitochondrion 23.61 26.19
CDY21016 Canola mitochondrion, plastid 22.3 25.21
CDY31217 Canola mitochondrion, plastid 22.12 24.74
CDY12012 Canola plastid 23.05 23.75
CDY36727 Canola plastid 23.05 23.18
CDY34925 Canola mitochondrion 8.18 17.12
CDY69187 Canola cytosol, nucleus 0.56 0.48
CDY17299 Canola cytosol, plastid 0.56 0.45
Protein Annotations
KEGG:00010+2.3.1.12KEGG:00020+2.3.1.12KEGG:00620+2.3.1.12InterPro:2-oxoA_DH_lipoyl-BSInterPro:2-oxoacid_DH_actylTfraseMapMan:2.2.1.2
Gene3D:2.40.50.100Gene3D:3.30.559.10Gene3D:4.10.320.10GO:A0A078D2N4InterPro:Biotin_lipoylInterPro:CAT-like_dom_sf
EnsemblPlants:CDX82504ProteinID:CDX82504ProteinID:CDX82504.1InterPro:E3-bd_dom_sfGO:GO:0003674GO:GO:0003824
GO:GO:0004742GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737GO:GO:0006090
GO:GO:0008150GO:GO:0008152GO:GO:0009987GO:GO:0016740GO:GO:0016746GO:GO:0045254
EnsemblPlantsGene:GSBRNA2T00137649001InterPro:IPR000089InterPro:IPR004167InterPro:IPR023213InterPro:IPR036625InterPro:LAT1
PFAM:PF00198PFAM:PF00364PFAM:PF02817ScanProsite:PS00189PFscan:PS50968PFscan:PS51826
InterPro:PSBDPANTHER:PTHR43178PANTHER:PTHR43178:SF1SUPFAM:SSF47005SUPFAM:SSF51230SUPFAM:SSF52777
InterPro:Single_hybrid_motifTIGRFAMs:TIGR01349UniParc:UPI0004EEDD9BSEG:seg::
Description
BnaA03g33170D
Coordinates
chrLK031828:-:1621793..1625598
Molecular Weight (calculated)
58202.3 Da
IEP (calculated)
7.424
GRAVY (calculated)
-0.369
Length
538 amino acids
Sequence
(BLAST)
001: MAYASRIIIH SNKLKHVSTL LRREHSVAAR GFSNSSTHSS LTAREDMLKT RPPVERISKC CATTVPRPSG ISTMSTKPMT GPSFFREYIS SQMRSVRGFS
101: SGSDLPPHQE IGMPSLSPTM TEACTSLNFL TTIHGNIARW LKKEGDKVAP GEVLCEVETD KATVEMECME EGYLAKILKE EGTKAIQVGE VIAITVEEEE
201: DIQKFKDYTP SSGGSPAAPE AKPAPSPPKE EKVEKPASAP EAKTSKPSSA PSEDRTFASP LAKKLAEDNN VPLSSIKATG PEGRIVKADV EEFLASRGKE
301: TTAKPSKPTD SKAPALDYVT ASRLAFSKQT IPHYYLTVDT CVDKMMGLRS QLNSCQEANG GKRISVNDLV IKAAALALRK VPQCNSSWTD EYIRQFSNVN
401: INVAVQTENG LYVPVVKDAD KKGLSTIGEE VRFLAQKAKE NSLKPEDYEG GTFTVSNLGG PFGIKQFCAV INPPQAAILA IGSAEKRVVA GGDPDQFNVA
501: SYMSVTLSCD HRVIDGAIGA EWLKAFKGYI ETPESMLL
Best Arabidopsis Sequence Match ( AT3G13930.1 )
(BLAST)
001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL
Arabidopsis Description
Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN9]
SUBAcon: [mitochondrion]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.