Factsheet for TraesCS6D01G024400.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, golgi

Predictor Summary:

mitochondrion 7

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi, mitochondrion
Any Predictor:	mitochondrion
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
Predotar:	mitochondrion
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	mitochondrion

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G481800.3	mitochondrion, mitochondrion, mitochondrion
TraesCS6A01G022600.2	mitochondrion, mitochondrion, mitochondrion
TraesCS6B01G028600.1	mitochondrion, mitochondrion, mitochondrion
TraesCS6D01G024400.1	mitochondrion, mitochondrion, mitochondrion
TraesCS7A01G014600.4	mitochondrion, mitochondrion, mitochondrion
TraesCS7D01G011600.1	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	TraesCS4A01G481800.3	AT1G54220.1	24846799
AT1G54220.1	TraesCS6A01G022600.2	AT1G54220.1	24846799
AT1G54220.1	TraesCS6B01G028600.1	AT1G54220.1	24846799
AT1G54220.1	TraesCS6D01G024400.1	AT1G54220.1	24846799
AT1G54220.1	TraesCS7A01G014600.4	AT1G54220.1	24846799
AT1G54220.1	TraesCS7D01G011600.1	AT1G54220.1	24846799
AT1G54220.1	TraesCS4A01G481800.3	AT3G13930.1	24846799
AT1G54220.1	TraesCS6A01G022600.2	AT3G13930.1	24846799
AT1G54220.1	TraesCS6B01G028600.1	AT3G13930.1	24846799
AT1G54220.1	TraesCS6D01G024400.1	AT3G13930.1	24846799
AT1G54220.1	TraesCS7A01G014600.4	AT3G13930.1	24846799
AT1G54220.1	TraesCS7D01G011600.1	AT3G13930.1	24846799
AT3G13930.1	TraesCS4A01G481800.3	AT3G13930.1	24846799
AT3G13930.1	TraesCS6A01G022600.2	AT3G13930.1	24846799
AT3G13930.1	TraesCS6B01G028600.1	AT3G13930.1	24846799
AT3G13930.1	TraesCS6D01G024400.1	AT3G13930.1	24846799
AT3G13930.1	TraesCS7A01G014600.4	AT3G13930.1	24846799
AT3G13930.1	TraesCS7D01G011600.1	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G028600.1	Wheat	mitochondrion	96.31	98.12
TraesCS6A01G022600.2	Wheat	golgi	96.86	97.58
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	93.73	95.13
EES04754	Sorghum	mitochondrion	85.24	85.71
Os07t0410100-01	Rice	mitochondrion	85.42	85.58
Os02t0105200-01	Rice	mitochondrion	84.5	83.58
Zm00001d053580_P002	Maize	mitochondrion	83.58	82.21
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	75.83	75.97
Zm00001d016365_P002	Maize	mitochondrion	82.84	72.77
AT3G13930.1	Thale cress	mitochondrion	63.65	64.01
KRH47526	Soybean	mitochondrion	64.58	63.99
KRH06095	Soybean	mitochondrion	64.39	63.8
Solyc07g006790.2.1	Tomato	plastid	64.94	63.65
PGSC0003DMT400048225	Potato	mitochondrion	64.39	63.22
Bra001531.1-P	Field mustard	mitochondrion, plastid	54.24	63.09
VIT_11s0016g01870.t01	Wine grape	mitochondrion	63.47	62.89
Bra037976.1-P	Field mustard	mitochondrion	62.36	62.48
VIT_09s0002g01800.t01	Wine grape	mitochondrion	63.84	62.34
AT1G54220.1	Thale cress	mitochondrion	61.99	62.34
Bra027386.1-P	Field mustard	mitochondrion	57.2	62.0
CDX82504	Canola	plastid	61.44	61.9
CDY55206	Canola	mitochondrion	57.75	61.13
CDY24058	Canola	mitochondrion	62.18	60.72
CDY33075	Canola	mitochondrion, plastid	61.99	60.54
CDX97529	Canola	mitochondrion	62.55	60.32
CDX75740	Canola	mitochondrion, plastid	62.18	60.07
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	65.68	56.06
TraesCS7D01G301900.1	Wheat	golgi	35.42	36.64
TraesCS5D01G126000.1	Wheat	cytosol	23.43	31.13
TraesCS5D01G490000.1	Wheat	golgi, plastid, unclear	25.83	29.54
TraesCS5D01G212800.1	Wheat	plastid	24.35	28.51
TraesCS4D01G070200.1	Wheat	mitochondrion	22.32	27.63
TraesCS2D01G039500.2	Wheat	mitochondrion	21.77	26.52
TraesCS2D01G073400.1	Wheat	mitochondrion	21.77	23.23
TraesCS5D01G125900.1	Wheat	plastid	0.92	1.64

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0006090	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0016740
GO:GO:0016746	GO:GO:0045254	InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625
InterPro:LAT1	PFAM:PF00198	PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968
PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178	PANTHER:PTHR43178:SF4	SUPFAM:SSF47005	SUPFAM:SSF51230
SUPFAM:SSF52777	InterPro:Single_hybrid_motif	TIGRFAMs:TIGR01349	EnsemblPlantsGene:TraesCS6D01G024400	EnsemblPlants:TraesCS6D01G024400.1	TIGR:cd06849
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr6D:-:9247681..9254158

Molecular Weight (calculated)

58300.5 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.381

Length

542 amino acids

Sequence
(BLAST)

001: MSAAQLLRHS RKLRSLRNSV DCERTSLARY FSTGSGSSAV KENGVEKRIG GARFSQYKQP GKELETFKVS LGGANGSSTC RRMLINRVPS AVTGLNGSLS
101: CGRVASARSF SSSADLPPHQ EIGMPSLSPT MTEGNIAKWI KKEGDKVSPG EVLCEVETDK ATVEMECMEE GYLAKIVQGD GAKEIKVGEV ICVTVEEEGD
201: IEKFKDYKPS AADAPAAPSE SKATPEPAAP KVEEKVPAKA PEPKAPKAEK ASRSGDRIFA SPLARKLAED NNVQLSSVKG TGPDGRILKA DIEDYLAKGG
301: KSEAFAASGL DYTDIPNAQI RKVTANRLLA SKQTIPHYYL TVDTRVDKLI KLRGELNPLQ EASGGKKISI NDLVIKAAAL ALRKVPECNS SWMNDFIRQY
401: HNVNINVAVQ TEHGLFVPVV RDADKKGLGT IGEEVKQLAQ RARDNSLKPQ DYEGGTFTVS NLGGPFGIKQ FCAIINPPQS AILAIGSAEK RVIPGSADGQ
501: YEFGSYMSVT MSCDHRVIDG AIGAEFLKAF KGYIENPTTM LL

Best Arabidopsis Sequence Match ( AT1G54220.2 )
(BLAST)

001: MAYASRIINH SKKLKDVSTL LRRENAATIR YYSNTNRAPL NREDTFNSRL GYPPLERISI CSTSTLPVSI IFSTTRSNLS SAMGRPIFGK EFSCLMQSAR
101: GFSSGSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGYLAKIVK AEGSKEIQVG EVIAITVEDE EDIGKFKDYT
201: PSSTADAAPT KAEPTPAPPK EEKVKQPSSP PEPKASKPST PPTGDRVFAS PLARKLAEDN NVPLSDIEGT GPEGRIVKAD IDEYLASSGK GATAKPSKST
301: DSKAPALDYV DIPHSQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKLMALR SQLNSFKEAS GGKRISVNDL VVKAAALALR KVPQCNSSWT DDYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DRKGLSTIGE EVRLLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VVNPPQAAIL AVGSAEKRVV PGNGPDQFNF
501: ASYMPVTLSC DHRVVDGAIG AEWLKAFKGY IENPKSMLL

Arabidopsis Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:A0A178W5Y1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.