Factsheet for Solyc07g006790.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 2
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
nucleus: 25464976
unclear: 26455813
nucleus: 28394025
endoplasmic reticulum: 29145071
extracellular: 29876421

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29876421 doi

L Ceballos-Laita, E Gutierrez-Carbonell, D Takahashi, A Abadía, M Uemura, J Abadía, AF López-Millán

Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan., Plant Stress Physiology Group, Plant Nutrition Department, Aula Dei Experimental Station, CSIC, P.O. Box 13034, 50080 Zaragoza, Spain., United Graduate School of Agricultural Sciences, Iwate University, Morioka 020-8550, Japan., USDA-ARS Children's Nutrition Research Center, Department of Pediatrics, Baylor College of Medicine, 1100 Bates St., Houston, TX 77030, USA.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g006790.2.1	mitochondrion, mitochondrion, mitochondrion

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G54220.1	Solyc07g006790.2.1	AT1G54220.1	24846799
AT1G54220.1	Solyc07g006790.2.1	AT3G13930.1	24846799
AT3G13930.1	Solyc07g006790.2.1	AT3G13930.1	24846799

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400048225	Potato	mitochondrion	96.38	96.56
VIT_11s0016g01870.t01	Wine grape	mitochondrion	69.26	70.02
VIT_09s0002g01800.t01	Wine grape	mitochondrion	70.16	69.91
KRH06095	Soybean	mitochondrion	68.9	69.65
KRH47526	Soybean	mitochondrion	68.54	69.29
AT3G13930.1	Thale cress	mitochondrion	66.0	67.72
Bra027386.1-P	Field mustard	mitochondrion	60.76	67.2
Bra037976.1-P	Field mustard	mitochondrion	65.46	66.91
Bra001531.1-P	Field mustard	mitochondrion, plastid	56.24	66.74
AT1G54220.1	Thale cress	mitochondrion	64.56	66.23
CDY55206	Canola	mitochondrion	61.3	66.21
CDY33075	Canola	mitochondrion, plastid	65.82	65.59
CDX82504	Canola	plastid	63.65	65.43
HORVU6Hr1G003770.1	Barley	cytosol, mitochondrion	63.11	65.36
CDY24058	Canola	mitochondrion	65.46	65.23
CDX97529	Canola	mitochondrion	66.0	64.95
TraesCS6D01G024400.1	Wheat	golgi, mitochondrion	63.65	64.94
EES04754	Sorghum	mitochondrion	63.29	64.94
TraesCS6B01G028600.1	Wheat	mitochondrion	62.39	64.85
CDX75740	Canola	mitochondrion, plastid	65.28	64.35
Os07t0410100-01	Rice	mitochondrion	62.93	64.33
TraesCS6A01G022600.2	Wheat	golgi	62.57	64.31
Zm00001d053580_P002	Maize	mitochondrion	63.29	63.52
Os02t0105200-01	Rice	mitochondrion	62.75	63.32
Os06t0105400-02	Rice	mitochondrion	61.12	61.45
TraesCS7D01G011600.1	Wheat	golgi, mitochondrion	59.67	61.0
TraesCS4A01G481800.3	Wheat	mitochondrion, unclear	59.31	60.85
TraesCS7A01G014600.4	Wheat	golgi, mitochondrion	59.49	60.81
Zm00001d016365_P002	Maize	mitochondrion	63.83	57.21
HORVU7Hr1G001330.9	Barley	plastid	58.77	56.33
GSMUA_Achr10P...	Banana	mitochondrion, vacuole	63.29	55.12
Solyc11g017250.1.1	Tomato	plastid	27.67	32.69
Solyc05g009530.2.1	Tomato	plastid	27.12	32.68
Solyc11g007720.1.1	Tomato	nucleus, unclear	36.17	31.06
Solyc12g005080.1.1	Tomato	nucleus	19.53	29.19
Solyc07g064800.2.1	Tomato	extracellular, nucleus	21.7	25.64
Solyc01g066520.2.1	Tomato	plastid	22.6	24.75

Protein Annotations

KEGG:00010+2.3.1.12	KEGG:00020+2.3.1.12	KEGG:00620+2.3.1.12	InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	MapMan:2.2.1.2
Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf
GO:GO:0003674	GO:GO:0003824	GO:GO:0004742	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005739	GO:GO:0005759	GO:GO:0006090	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0016740	GO:GO:0016746	GO:GO:0045254	InterPro:IPR000089	InterPro:IPR004167
InterPro:IPR023213	InterPro:IPR036625	UniProt:K4CBF0	InterPro:LAT1	PFAM:PF00198	PFAM:PF00364
PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD	PANTHER:PTHR43178
PANTHER:PTHR43178:SF1	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif	EnsemblPlantsGene:Solyc07g006790.2
EnsemblPlants:Solyc07g006790.2.1	TIGRFAMs:TIGR01349	UniParc:UPI000276C7B0	SEG:seg	:	:

Description

Acetyltransferase component of pyruvate dehydrogenase complex [Source:UniProtKB/TrEMBL;Acc:K4CBF0]

Coordinates

chr7:+:1637797..1645252

Molecular Weight (calculated)

59637.8 Da

IEP (calculated)

8.278

GRAVY (calculated)

-0.380

Length

553 amino acids

Sequence
(BLAST)

001: MTYATHVLRH SKKIGSSSNL IRCDSAGLVR WFSNGTRPSM EKGDDILRCH SGLISGERHN IPKSFNRCYS GSAVSNNSCR TVSSRMSCGN ALRTTIAPCT
101: STGSISFIRR SSGSQAPSRR GFSTASDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVS PGEVLCEVET DKATVEMECM EEGYLAKIIH GDGASSIKVG
201: EVIAVTVEEE DDIAKFKDYQ PSTSDATPSP KAPASSPPPP KEEVAEKPVT PSQPKVSKPS ASDRIFASPL ARKIAEDNNI PLTNIKGTGP EGRIVKADIE
301: DYLASRGKEA PAAAPKADTS LDYTDIPVAQ IRKVTASRLL LSKQTIPHYY LTVDTCVDKL IELRSKLNAL QEASGGKKLS VNDLVIKAAA LALRKVPQCN
401: SSWTNDYIRQ YHNVNINVAV QTDNGLYVPV VRDADKKGLS SISEEVKNLA QKAKENSLKP QDYEGGTFTV SNLGGPFGIK QFCAIINPPQ SAILAVGSAE
501: KRVLPGSSEG EYKFASMMSV TLSCDHRVID GAIGAEWLKA FKGYIENPES MLL

Best Arabidopsis Sequence Match ( AT3G13930.1 )
(BLAST)

001: MASRIINHSK KLKHVSALLR RDHAVAVRCF SNSTHPSLVG REDIFKARLN YSSVERISKC GTGNVTMLSG ISTTSTKLSS PMAGPKLFKE FISSQMRSVR
101: GFSSSSDLPP HQEIGMPSLS PTMTEGNIAR WLKKEGDKVA PGEVLCEVET DKATVEMECM EEGFLAKIVK EEGAKEIQVG EVIAITVEDE DDIQKFKDYT
201: PSSDTGPAAP EAKPAPSLPK EEKVEKPASA PEAKISKPSS APSEDRIFAS PLARKLAEDN NVPLSSIKGT GPEGRIVKAD VEDFLASGSK ETTAKPSKQV
301: DSKVPALDYV DIPHTQIRKV TASRLAFSKQ TIPHYYLTVD TCVDKMMGLR SQLNSFQEAS GGKRISVNDL VIKAAALALR KVPQCNSSWT DEYIRQFKNV
401: NINVAVQTEN GLYVPVVKDA DKKGLSTIGE EVRFLAQKAK ENSLKPEDYE GGTFTVSNLG GPFGIKQFCA VINPPQAAIL AIGSAEKRVV PGTGPDQYNV
501: ASYMSVTLSC DHRVIDGAIG AEWLKAFKGY IETPESMLL

Arabidopsis Description

Dihydrolipoyllysine-residue acetyltransferase component 2 of pyruvate dehydrogenase complex, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q8RWN9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.