Factsheet for Solyc11g017250.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 2

Predictors

GFP

MS/MS

Papers

plastid: 20363867
plastid: 22908117
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g079470.2.1
Solyc03g059310.2.1
Solyc06g009630.1.1
Solyc06g051160.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G34430.1	Solyc01g079470.2.1	AT2G47400.1	21798944
AT1G34430.1	Solyc06g009630.1.1	AT2G47400.1	21798944
AT1G34430.1	Solyc06g051160.2.1	AT3G17668.1	21798944
AT1G34430.1	Solyc03g059310.2.1	AT3G18140.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400023831	Potato	plastid	97.01	97.84
GSMUA_Achr9P08540_001	Banana	cytosol	45.51	89.12
KRG91819	Soybean	endoplasmic reticulum, nucleus	75.85	76.34
TraesCS5D01G126000.1	Wheat	cytosol	65.6	75.25
KRH34962	Soybean	plastid	75.21	75.05
CDY12039	Canola	plastid	71.58	74.44
CDY03145	Canola	plastid	72.01	73.9
Bra028057.1-P	Field mustard	plastid	71.58	73.63
VIT_18s0072g01000.t01	Wine grape	plastid	74.79	73.38
AT1G34430.1	Thale cress	plastid	72.86	73.33
OQU78843	Sorghum	plastid	70.94	72.49
Zm00001d023606_P005	Maize	plastid	70.73	72.43
TraesCS5A01G119600.1	Wheat	plastid	69.87	71.71
Os12t0182200-01	Rice	plastid	71.15	71.31
TraesCS5B01G116300.1	Wheat	golgi, unclear	69.66	71.02
Solyc05g009530.2.1	Tomato	plastid	61.54	62.75
GSMUA_Achr9P08550_001	Banana	plastid	18.16	60.71
Zm00001d041839_P001	Maize	plastid	70.51	55.65
HORVU5Hr1G038090.3	Barley	plastid	50.21	54.52
Solyc07g006790.2.1	Tomato	plastid	32.69	27.67
Solyc12g005080.1.1	Tomato	nucleus	17.95	22.7
Solyc11g007720.1.1	Tomato	nucleus, unclear	30.13	21.89
Solyc01g066520.2.1	Tomato	plastid	23.5	21.78
Solyc07g064800.2.1	Tomato	extracellular, nucleus	18.38	18.38
CDY34925	Canola	mitochondrion	9.4	17.12
Bra040295.1-P	Field mustard	mitochondrion	9.4	17.12
TraesCS5D01G125900.1	Wheat	plastid	2.56	3.93
CDY69187	Canola	cytosol, nucleus	0.0	0.0
CDY17299	Canola	cytosol, plastid	0.0	0.0

Protein Annotations

InterPro:2-oxoA_DH_lipoyl-BS	InterPro:2-oxoacid_DH_actylTfrase	Gene3D:2.40.50.100	Gene3D:3.30.559.10	Gene3D:4.10.320.10	MapMan:5.1.2.2.2
InterPro:Biotin_lipoyl	InterPro:CAT-like_dom_sf	InterPro:E3-bd_dom_sf	GO:GO:0003674	GO:GO:0003824	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829
GO:GO:0005840	GO:GO:0005886	GO:GO:0008150	GO:GO:0008152	GO:GO:0009507	GO:GO:0009536
GO:GO:0009941	GO:GO:0016020	GO:GO:0016740	GO:GO:0016746	GO:GO:0019904	GO:GO:0022626
InterPro:IPR000089	InterPro:IPR004167	InterPro:IPR023213	InterPro:IPR036625	UniProt:K4D6M8	PFAM:PF00198
PFAM:PF00364	PFAM:PF02817	ScanProsite:PS00189	PFscan:PS50968	PFscan:PS51826	InterPro:PSBD
PANTHER:PTHR23151	PANTHER:PTHR23151:SF61	SUPFAM:SSF47005	SUPFAM:SSF51230	SUPFAM:SSF52777	InterPro:Single_hybrid_motif
EnsemblPlantsGene:Solyc11g017250.1	EnsemblPlants:Solyc11g017250.1.1	UniParc:UPI000276A8E4	SEG:seg	:	:

Description

Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:Projected from Arabidopsis thaliana (AT1G34430) UniProtKB/Swiss-Prot;Acc:Q9C8P0]

Coordinates

chr11:+:8083498..8089958

Molecular Weight (calculated)

48860.7 Da

IEP (calculated)

8.810

GRAVY (calculated)

0.066

Length

468 amino acids

Sequence
(BLAST)

001: MSHLLQSTFI PTTPTTLRRR SVFPTTHLRK THVVESKIRE IFMPALSSTM TEGKIISWMK TEGDKLAKGE SVVVVESDKA DMDVESFYDG YLASIIVPEG
101: SSAPVGSPIA LLAESEDEIS LAKSKTPTST STSSPAATAS VTEEVSTVAA AVAVPVTATS SSDAAPVKMA SSIHPASEGG KRVVASPYAK KLAKELGLDL
201: RGVVGSGPNG RIVAKDVEAA AGSAPIGVAA AAKPSGGAPA APAVELGTTV PFTTMQSAVS RNMVESLAVP TFRVGYTITT NALDALYKKV KSKGVTMTAL
301: LAKATALALV QHPVVNSSCR DGKSFTYNSS INIAVAVAID GGLITPVLQD ADKVDLYSLS RKWKELVDKA RAKQLQPHEY TTGTFTLSNL GMFGVDRFDA
401: ILPPGTGAIM AVGASQPTLV GTKDGRIGMK NQMQVNVTAD HRVIYGADLA AFLQTLAQII EDPKDLTL

Best Arabidopsis Sequence Match ( AT1G34430.1 )
(BLAST)

001: MSRLLQTPFL PSVSLPTKTR SSVTGFRVKP RIIPIQAKIR EIFMPALSST MTEGKIVSWV KSEGDKLNKG ESVVVVESDK ADMDVETFYD GYLAAIMVEE
101: GGVAPVGSAI ALLAETEDEI ADAKAKASGG GGGGDSKAPP ASPPTAAVEA PVSVEKKVAA APVSIKAVAA SAVHPASEGG KRIVASPYAK KLAKELKVEL
201: AGLVGSGPMG RIVAKDVEAV AAGGGVQAAV AVKEVVAAPG VELGSVVPFT TMQGAVSRNM VESLGVPTFR VGYTISTDAL DALYKKIKSK GVTMTALLAK
301: ATALALAKHP VVNSSCRDGN SFVYNSSINV AVAVAIDGGL ITPVLQNADK VDIYSLSRKW KELVDKARAK QLQPQEYNTG TFTLSNLGMF GVDRFDAILP
401: PGTGAIMAVG ASQPSVVATK DGRIGMKNQM QVNVTADHRV IYGADLAQFL QTLASIIEDP KDLTF

Arabidopsis Description

EMB3003Dihydrolipoyllysine-residue acetyltransferase component 5 of pyruvate dehydrogenase complex, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C8P0]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.