Factsheet for Solyc06g051160.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g081170.2.1
Solyc03g096760.1.1
Solyc03g096770.1.1
Solyc03g096780.1.1
Solyc03g112920.1.1
Solyc06g061020.2.1
Solyc06g072990.1.1
Solyc06g073150.2.1
Solyc06g074530.1.1
Solyc08g007120.2.1
Solyc08g077460.2.1
Solyc10g007730.2.1
Solyc11g017300.1.1
Solyc11g066890.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17668.1	Solyc10g007730.2.1	AT1G06510.1	21798944
AT3G17668.1	Solyc06g073150.2.1	AT1G22920.1	21798944
AT3G17668.1	Solyc11g017300.1.1	AT1G22920.1	21798944
AT3G17668.1	Solyc06g074530.1.1	AT3G44720.1	21798944
AT3G17668.1	Solyc11g066890.1.1	AT3G44720.1	21798944
AT3G17668.1	Solyc03g112920.1.1	AT3G48550.1	21798944
AT3G17668.1	Solyc03g096760.1.1	AT3G49580.1	21798944
AT3G17668.1	Solyc03g096770.1.1	AT3G49580.1	21798944
AT3G17668.1	Solyc03g096780.1.1	AT3G49580.1	21798944
AT3G17668.1	Solyc06g072990.1.1	AT3G49580.1	21798944
AT3G17668.1	Solyc06g061020.2.1	AT4G17680.1	21798944
AT3G17668.1	Solyc08g007120.2.1	AT4G17680.1	21798944
AT3G17668.1	Solyc08g077460.2.1	AT4G17680.1	21798944
AT3G17668.1	Solyc02g081170.2.1	AT4G22240.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400040427	Potato	plastid	94.07	94.07
KRH73492	Soybean	plastid	62.96	61.15
EES12747	Sorghum	plastid	53.33	55.38
VIT_15s0021g00250.t01	Wine grape	cytosol	42.96	54.21
GSMUA_Achr2P18190_001	Banana	plastid	57.78	53.06
Zm00001d002501_P001	Maize	cytosol	30.37	52.56
TraesCS2A01G451100.1	Wheat	plastid	50.37	52.31
TraesCS2B01G472600.1	Wheat	plastid	50.37	52.31
TraesCS2D01G450800.1	Wheat	plastid	50.37	52.31
Os04t0589200-01	Rice	plastid	48.15	49.24
AT3G17668.1	Thale cress	plastid	47.41	47.41
HORVU2Hr1G105520.1	Barley	cytosol, plastid	47.41	45.71
CDY46888	Canola	mitochondrion	45.19	44.85

Protein Annotations

EnsemblPlants:Solyc06g051160.2.1	EnsemblPlantsGene:Solyc06g051160.2	InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF30	SEG:seg
SUPFAM:SSF57938	UniParc:UPI0002766ED3	UniProt:K4C5Q9	MapMan:35.2	:	:

Description

No Description!

Coordinates

chr6:-:34324980..34329810

Molecular Weight (calculated)

15075.1 Da

IEP (calculated)

8.822

GRAVY (calculated)

-0.550

Length

135 amino acids

Sequence
(BLAST)

001: MGAITLSCFV NSIGGEAPNS SNALPSKPKL SPLLSFSKPS WVVRTESNVR KERRKQPDPP CVVCKGNGRV ECYHCHGRGR TNFLDLEMLP RGEWPKWCKS
101: CGGSGLGYCS RCLGTGEYRY IMGFHFMKRD DEPEV

Best Arabidopsis Sequence Match ( AT3G17668.1 )
(BLAST)

001: MAVNACLSPP EMMAVRPGEG VPNSKSTQGK TRLYLTKPSW IVRTQSGAKT CMKSKAKGRC VICHGSGRVD CFNCCGKGRT NCVDVEMLPR GEWPKWCKSC
101: GGSGLSDCSR CLGTGEYRYI MGFRFLNQND DADPQ

Arabidopsis Description

ENAENA [Source:UniProtKB/TrEMBL;Acc:A0A178VIM6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.