Factsheet for VIT_15s0021g00250.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 2
nucleus 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g00290.t01
VIT_03s0038g04360.t01
VIT_12s0028g00200.t01
VIT_16s0098g00600.t01
VIT_17s0000g01360.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G17668.1	VIT_12s0028g00200.t01	AT1G06510.1	21798944
AT3G17668.1	VIT_03s0038g04360.t01	AT1G22920.1	21798944
AT3G17668.1	VIT_17s0000g01360.t01	AT3G48550.1	21798944
AT3G17668.1	VIT_16s0098g00600.t01	AT3G49580.1	21798944
AT3G17668.1	VIT_02s0012g00290.t01	AT4G17680.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d002501_P001	Maize	cytosol	36.45	50.0
KRH73492	Soybean	plastid	59.81	46.04
PGSC0003DMT400040427	Potato	plastid	54.21	42.96
Solyc06g051160.2.1	Tomato	plastid	54.21	42.96
EES12747	Sorghum	plastid	48.6	40.0
GSMUA_Achr2P18190_001	Banana	plastid	53.27	38.78
AT3G17668.1	Thale cress	plastid	47.66	37.78
CDY46888	Canola	mitochondrion	47.66	37.5
Os04t0589200-01	Rice	plastid	45.79	37.12
TraesCS2A01G451100.1	Wheat	plastid	44.86	36.92
TraesCS2B01G472600.1	Wheat	plastid	44.86	36.92
TraesCS2D01G450800.1	Wheat	plastid	44.86	36.92
HORVU2Hr1G105520.1	Barley	cytosol, plastid	44.86	34.29

Protein Annotations

ArrayExpress:VIT_15s0021g00250	EMBL:FN594952	EnsemblPlants:VIT_15s0021g00250.t01	EnsemblPlantsGene:VIT_15s0021g00250	EntrezGene:100259890	EntrezGene:LOC100259890
InterPro:HSP_DnaJ_Cys-rich_dom_sf	PANTHER:PTHR15852	PANTHER:PTHR15852:SF30	ProteinID:CCB43950	ProteinID:CCB43950.1	RefSeq:XP_002263419
RefSeq:XP_002263419.1	SUPFAM:SSF57938	UniParc:UPI000210A8E8	UniProt:F6GVG7	wikigene:100259890	wikigene:LOC100259890
MapMan:35.2	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:9740460..9742413

Molecular Weight (calculated)

12143.4 Da

IEP (calculated)

8.156

GRAVY (calculated)

-0.896

Length

107 amino acids

Sequence
(BLAST)

001: MPDSPCEVCK GSGRVDCHHC QGRGRTNCVQ LIMLPKGEWP KWCRTCGGSG LSYCSRCLGT GEYRDIMGFH FMKRGTDQSQ DHKNSQVRDN PRPHSTADLL
101: INEEQWK

Best Arabidopsis Sequence Match ( AT3G17668.1 )
(BLAST)

001: MAVNACLSPP EMMAVRPGEG VPNSKSTQGK TRLYLTKPSW IVRTQSGAKT CMKSKAKGRC VICHGSGRVD CFNCCGKGRT NCVDVEMLPR GEWPKWCKSC
101: GGSGLSDCSR CLGTGEYRYI MGFRFLNQND DADPQ

Arabidopsis Description

ENAENA [Source:UniProtKB/TrEMBL;Acc:A0A178VIM6]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.