Factsheet for VIT_12s0028g00200.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
extracellular 1
nucleus 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0238g00110.t01
VIT_05s0029g01220.t01
VIT_05s0049g01500.t01
VIT_08s0007g07790.t01
VIT_08s0056g00160.t01
VIT_13s0156g00270.t01
VIT_16s0098g01840.t01
VIT_19s0014g02890.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G06510.1	VIT_05s0049g01500.t01	AT1G32580.1	21798944
AT1G06510.1	VIT_13s0156g00270.t01	AT2G32840.1	21798944
AT1G06510.1	VIT_08s0007g07790.t01	AT2G42260.1	21798944
AT1G06510.1	VIT_00s0238g00110.t01	AT3G15360.1	21798944
AT1G06510.1	VIT_19s0014g02890.t01	AT3G15360.1	21798944
AT1G06510.1	VIT_16s0098g01840.t01	AT3G49240.1	21798944
AT1G06510.1	VIT_08s0056g00160.t01	AT3G60360.1	21798944
AT1G06510.1	VIT_05s0029g01220.t01	AT5G49210.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400054832	Potato	cytosol	54.01	53.45
Solyc10g007730.2.1	Tomato	cytosol	53.66	53.1
Bra015506.1-P	Field mustard	plastid	48.78	51.28
CDY06646	Canola	plastid	48.78	51.28
CDY10205	Canola	plastid	49.83	51.25
AT1G06510.1	Thale cress	plastid	48.43	50.18
KRH73638	Soybean	plastid	49.83	48.81
KRH14485	Soybean	plastid	48.08	46.62
GSMUA_Achr7P17650_001	Banana	plastid	36.59	36.97
TraesCS3D01G257600.1	Wheat	mitochondrion, plastid	31.71	31.71
TraesCS3B01G290400.1	Wheat	plastid	32.06	31.4
TraesCS3A01G257600.1	Wheat	plastid	31.71	31.06
Os01t0696000-02	Rice	plastid	31.36	29.61
HORVU3Hr1G065350.1	Barley	plastid	27.53	27.43
KXG33191	Sorghum	mitochondrion	28.57	26.28
Zm00001d043764_P005	Maize	mitochondrion	29.97	23.5

Protein Annotations

EntrezGene:100245557	wikigene:100245557	MapMan:35.2	ProteinID:CCB47467	ProteinID:CCB47467.1	ncoils:Coil
UniProt:F6H5C0	EMBL:FN595235	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0009507	GO:GO:0009536	EntrezGene:LOC100245557	wikigene:LOC100245557	PANTHER:PTHR37174	UniParc:UPI00019843E3
ArrayExpress:VIT_12s0028g00200	EnsemblPlantsGene:VIT_12s0028g00200	EnsemblPlants:VIT_12s0028g00200.t01	unigene:Vvi.21182	RefSeq:XP_002283630	RefSeq:XP_002283630.1
RefSeq:XP_010657123.1	RefSeq:XP_010657124.1	RefSeq:XP_010657125.1	RefSeq:XP_010657126.1	RefSeq:XP_010657127.1	RefSeq:XP_010657128.1
RefSeq:XP_019079125.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr12:-:805705..823287

Molecular Weight (calculated)

32252.5 Da

IEP (calculated)

5.020

GRAVY (calculated)

-0.479

Length

287 amino acids

Sequence
(BLAST)

001: MLVVNCGAIG VLPRRLPWTN VCLCSASNMG TDQLRAQLDQ LHYEANNARA KANNARLRLM RLSEAAERLR RQAAISVQTG KENEARELLF QKKKVMQALE
101: KSKSRIELLD ELSAKLNEAI SVKESQLINN VSLDLEVGGE DALSPVRIVS PKEETTENSN ENEYFDFRPS EVGKGQEEQF LTDNQASVLL NSEDIQQGNV
201: NVGIWDKDDM IGSLQQISSY QSFLEHLDQQ LSKIEGELVA VLRLSTLILE NEGKPKNSKL QQTMDILESV RGIRLRITSI MQTKEAR

Best Arabidopsis Sequence Match ( AT1G06510.1 )
(BLAST)

001: MVTTTIGGVP VVIAQSRRIP TSLRCFSATA NSDLLRSQLD RLHAEAESTR AKANSNRLRL LRLSEAAENL REQAAVNVRT GKENDARDLL LQKKKVMQAL
101: DKAKARIELL DTLSSKLNEA ISVKETQLIG NISLDLEEDG ENTSGGIHIV SPKPESTEDG VENDHTHLDS EGIQLIERNV EDYQELLDTN NNVLEDVSIG
201: SILKEVSSYE SFLENLDQKL SRIEAELVTV VNVASLVLNH EDKPKNLKVQ QTAEILEEIR RVRERIANII CKEANIS

Arabidopsis Description

Forkhead-associated domain protein [Source:UniProtKB/TrEMBL;Acc:Q84K72]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.