Factsheet for VIT_16s0098g01840.t01

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_11s0118g00200.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	VIT_11s0118g00200.t01	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G052300.1	Barley	plastid	13.48	65.67
KRH64444	Soybean	mitochondrion	63.09	65.29
PGSC0003DMT400023464	Potato	plastid	64.01	64.11
Solyc03g083280.2.1	Tomato	nucleus	49.0	62.99
KRH53501	Soybean	mitochondrion	59.11	61.08
Bra019587.1-P	Field mustard	cytosol	52.22	60.68
CDY00193	Canola	plastid	53.14	59.72
Bra017999.1-P	Field mustard	cytosol	50.54	58.51
CDX86985	Canola	mitochondrion	52.37	58.06
CDX68524	Canola	cytosol, mitochondrion, plastid	54.67	56.85
AT3G49240.1	Thale cress	cytosol, plastid	54.36	56.44
CDY08118	Canola	plastid	51.15	56.04
CDX83077	Canola	mitochondrion, plastid	53.6	55.73
Bra029944.1-P	Field mustard	mitochondrion, plastid	54.82	55.42
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	50.84	50.53
GSMUA_Achr9P05870_001	Banana	mitochondrion	49.31	50.23
TraesCS3A01G214000.1	Wheat	cytosol	49.77	49.02
CDY05914	Canola	cytosol	11.33	49.01
TraesCS3D01G216600.1	Wheat	cytosol	49.62	48.87
Zm00001d044388_P001	Maize	plastid	41.35	48.74
HORVU3Hr1G052280.1	Barley	cytosol, plastid	49.46	48.72
EES03220	Sorghum	mitochondrion, plastid	49.31	48.35
TraesCS3B01G244700.1	Wheat	cytosol	49.16	47.7
Os11t0433600-01	Rice	nucleus	34.92	46.82
EES19865	Sorghum	mitochondrion	38.74	38.1
TraesCS1B01G369200.1	Wheat	mitochondrion	37.37	37.95
TraesCS1D01G357400.1	Wheat	mitochondrion	36.6	37.58
HORVU1Hr1G080900.3	Barley	cytosol, plastid	37.67	36.72
Zm00001d038733_P001	Maize	mitochondrion	36.75	36.04
TraesCS1A01G352600.1	Wheat	cytosol	22.36	34.19
CDY05913	Canola	cytosol	25.42	34.09
Os05t0534000-01	Rice	cytosol	14.24	32.29
VIT_12s0035g01700.t01	Wine grape	mitochondrion	29.25	30.46

Protein Annotations

Gene3D:1.25.40.10	EntrezGene:100241722	wikigene:100241722	MapMan:35.1	ProteinID:CCB48044	ProteinID:CCB48044.1
ncoils:Coil	UniProt:F6H780	EMBL:FN595247	GO:GO:0000003	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003824	GO:GO:0004518	GO:GO:0004519	GO:GO:0005488
GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0006139	GO:GO:0006349	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152
GO:GO:0009451	GO:GO:0009507	GO:GO:0009536	GO:GO:0009790	GO:GO:0009791	GO:GO:0009793
GO:GO:0009960	GO:GO:0009987	GO:GO:0016787	GO:GO:0040029	GO:GO:0090305	InterPro:IPR002885
InterPro:IPR011990	EntrezGene:LOC100241722	wikigene:LOC100241722	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041
PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756
InterPro:TPR-like_helical_dom_sf	UniParc:UPI00015CBAD9	ArrayExpress:VIT_16s0098g01840	EnsemblPlantsGene:VIT_16s0098g01840	EnsemblPlants:VIT_16s0098g01840.t01	RefSeq:XP_002272755
RefSeq:XP_002272755.1	RefSeq:XP_010662856.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr16:+:21928167..21930444

Molecular Weight (calculated)

72890.1 Da

IEP (calculated)

5.327

GRAVY (calculated)

-0.399

Length

653 amino acids

Sequence
(BLAST)

001: MALSKASFFT QLKTLTKPHL HHPPPPPLLS LRHLSFVTPE EAAAERRRRK RRLRIEPPLS SLRHQQAQPR QNPNPNHNPN APKLPEPVSA LSGNRLNLHN
101: RILGLIRVND LDEAALLTRH SIYSNCRPTI FTVNSVLAAL LRQSRYSDLL SLHRFITQAG VAANVVTHNL LINAYLDCRK TDTALEHYKQ LINDAPFNPS
201: PTTYRILIKG IVDNGKVERA LELKEEMLGK GFAADPVVYS YLMLGHVRNL NADGVFELYE ELKEKLGDVD DGVVVGSLMK GYFLRGMEKE AMQCYAEAVG
301: EGSKIRMSAV AFNSVLDALS KNGKFDEAML LFERMMAEYN PPRRLSMNLG SFNVMVDGFC TAGRFKDAIE VFRKMGEKRC SADTLSYNNL IEQLCNNGML
401: AEAEELYGEM ANKGVNPDEF TYVLLMDTCF KENRTDDGAG YFRKMVETGL RPNLAVYSKL VDGLVKVGKI DEAKSFYDLM VKKLKMDEAS YKFLMKALFE
501: VGKHDDVLKM IGDMLDDDAS EFTTDLQEFV KEELRKEGRE EDVVKLMEDK EREKAEAQAK EAAATEAAKA SAKAAVSSLL PSKLFGSKDT ENEPDVVIGN
601: TVEAISVNEE VEDVEQESIG DSPAESGSEE ATKAHNSADL DVKSDDRAEQ VTV

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.