CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX92473
CDY35815
CDY45096

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	CDX92473	AT5G20280.1	21798944
AT3G49240.1	CDY35815	AT5G20280.1	21798944
AT3G49240.1	CDY45096	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019587.1-P	Field mustard	cytosol	90.15	94.48
CDY00193	Canola	plastid	86.59	87.78
CDX83077	Canola	mitochondrion, plastid	80.65	75.64
AT3G49240.1	Thale cress	cytosol, plastid	80.14	75.04
CDY08118	Canola	plastid	75.72	74.83
CDX68524	Canola	cytosol, mitochondrion, plastid	78.61	73.73
CDY05914	Canola	cytosol	18.0	70.2
KRH53501	Soybean	mitochondrion	60.95	56.8
KRH64444	Soybean	mitochondrion	59.42	55.47
VIT_16s0098g01840.t01	Wine grape	plastid	58.06	52.37
PGSC0003DMT400023464	Potato	plastid	57.89	52.3
HORVU3Hr1G052300.1	Barley	plastid	11.54	50.75
Solyc03g083280.2.1	Tomato	nucleus	42.95	49.8
EES03220	Sorghum	mitochondrion, plastid	49.07	43.39
Zm00001d044388_P001	Maize	plastid	40.07	42.6
GSMUA_Achr9P05870_001	Banana	mitochondrion	45.16	41.5
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	46.18	41.4
CDY05913	Canola	cytosol	34.13	41.27
Os11t0433600-01	Rice	nucleus	33.45	40.45
TraesCS3A01G214000.1	Wheat	cytosol	45.16	40.12
TraesCS3D01G216600.1	Wheat	cytosol	44.65	39.67
HORVU3Hr1G052280.1	Barley	cytosol, plastid	44.48	39.52
TraesCS3B01G244700.1	Wheat	cytosol	44.65	39.08
TraesCS1B01G369200.1	Wheat	mitochondrion	37.69	34.53
EES19865	Sorghum	mitochondrion	38.03	33.73
TraesCS1D01G357400.1	Wheat	mitochondrion	36.33	33.65
HORVU1Hr1G080900.3	Barley	cytosol, plastid	38.2	33.58
Zm00001d038733_P001	Maize	mitochondrion	37.01	32.73
TraesCS1A01G352600.1	Wheat	cytosol	23.43	32.32
Os05t0534000-01	Rice	cytosol	13.41	27.43
CDY21873	Canola	cytosol	4.41	24.07
CDX93444	Canola	mitochondrion	24.28	18.79
CDY09648	Canola	extracellular, mitochondrion, plastid	11.54	18.04
CDX94912	Canola	mitochondrion	24.96	17.75
CDY34898	Canola	mitochondrion	25.47	17.56
CDY31037	Canola	mitochondrion	23.6	17.22
CDY20645	Canola	mitochondrion	23.94	17.17
CDY25066	Canola	cytosol	3.74	17.05
CDY53878	Canola	mitochondrion	3.74	15.28
CDY65945	Canola	cytosol	16.47	14.29
CDX95653	Canola	mitochondrion	6.45	9.48
CDY25062	Canola	mitochondrion	5.6	9.09
CDY33104	Canola	mitochondrion	5.6	8.97
CDY37773	Canola	mitochondrion	6.11	8.47
CDX80067	Canola	mitochondrion	5.6	7.59
CDY10671	Canola	mitochondrion	4.92	7.27
CDX80068	Canola	mitochondrion	6.28	6.99
CDY37774	Canola	mitochondrion	5.6	6.0
CDX95410	Canola	cytosol	0.51	5.77
CDX71714	Canola	cytosol	1.53	3.7
CDY53879	Canola	cytosol	1.02	3.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX86985	ProteinID:CDX86985	ProteinID:CDX86985.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00145821001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEAEBF
SEG:seg	:	:	:	:	:

Description

BnaC03g52550D

Coordinates

chrLK031848:-:1146740..1148643

Molecular Weight (calculated)

67144.1 Da

IEP (calculated)

5.464

GRAVY (calculated)

-0.440

Length

589 amino acids

Sequence
(BLAST)

001: MSISKAALLQ TIARAYRPRI PPLFSAVRQM SFATQEEAAA ESRRRKRRIR MEPPLNRSNQ PQISRPIQNP NIPKLPESVS ALTGKRLDLH NHILKLIREN
101: DLEEAALYTR HSVYSNCRPT IFTVNAVLTA QLRQSKYGAL LQLHGFINQA GIAANIITYN LIFQAYLDVR KPDVALEHYK LFIDNAPLNP SIATFRILVK
201: GLVDNESLEK AVEIKEDMSV RGFVPDPVVY SYLMIGCVRK SNADGVFKLY EELKEKLGGF VEDGVVYGLL MKGYFMKGMD KEAMECCEEA IEDNSKVRMS
301: AMAYNYVLEA LNENRKFDEA LKLFDEMKRE HDSPRRLALN LGSFNVMVNG YCGEGKLEEA LEVFRQMGEF SCSPDTLSFN NLMNQLCKNG LLAEAEKLYN
401: EMDEKKVKPD EYTYGLLMDT CFKEGKIEEG AAYYKTMVES SLRTNLAVYN RLQDQLVKAG KLDDAKSFFD MMVSKLKMDD EAYKFMMKAL SEAGRLDEML
501: KIVDEMLGDE TVRVSEEIQE FVKEELRKGG REDDLQKLMD EKERLKEEAK AKELEAAEAK KRSTNVSIAS LMSPKLEEEK KEEVKDALG

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.