Factsheet for GSMUA_Achr6P26580_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr4P06050_001
GSMUA_Achr9P22510_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G49240.1	GSMUA_Achr4P06050_001	AT5G20280.1	21798944
AT3G49240.1	GSMUA_Achr9P22510_001	AT5G20280.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr9P05870_001	Banana	mitochondrion	79.45	81.44
HORVU3Hr1G052300.1	Barley	plastid	13.09	64.18
Os11t0433600-01	Rice	nucleus	46.42	62.63
EES03220	Sorghum	mitochondrion, plastid	62.25	61.41
Zm00001d044388_P001	Maize	plastid	50.53	59.93
TraesCS3A01G214000.1	Wheat	cytosol	60.12	59.58
HORVU3Hr1G052280.1	Barley	cytosol, plastid	59.97	59.43
TraesCS3D01G216600.1	Wheat	cytosol	59.67	59.13
TraesCS3B01G244700.1	Wheat	cytosol	58.9	57.5
VIT_16s0098g01840.t01	Wine grape	plastid	50.53	50.84
KRH53501	Soybean	mitochondrion	48.1	50.0
KRH64444	Soybean	mitochondrion	47.95	49.92
PGSC0003DMT400023464	Potato	plastid	48.25	48.62
Bra019587.1-P	Field mustard	cytosol	41.4	48.4
CDY00193	Canola	plastid	41.86	47.33
Bra017999.1-P	Field mustard	cytosol	40.18	46.81
TraesCS1D01G357400.1	Wheat	mitochondrion	45.21	46.7
EES19865	Sorghum	mitochondrion	47.03	46.54
TraesCS1B01G369200.1	Wheat	mitochondrion	45.21	46.19
CDX86985	Canola	mitochondrion	41.4	46.18
Solyc03g083280.2.1	Tomato	nucleus	35.62	46.06
Zm00001d038733_P001	Maize	mitochondrion	45.97	45.35
TraesCS1A01G352600.1	Wheat	cytosol	29.38	45.2
AT3G49240.1	Thale cress	cytosol, plastid	43.07	44.99
CDY08118	Canola	plastid	40.79	44.97
HORVU1Hr1G080900.3	Barley	cytosol, plastid	45.81	44.93
CDX68524	Canola	cytosol, mitochondrion, plastid	42.16	44.11
CDX83077	Canola	mitochondrion, plastid	41.86	43.79
Bra029944.1-P	Field mustard	mitochondrion, plastid	42.47	43.19
Os05t0534000-01	Rice	cytosol	18.42	42.01
CDY05914	Canola	cytosol	8.22	35.76
CDY05913	Canola	cytosol	21.61	29.16
GSMUA_Achr10P...	Banana	mitochondrion, plastid	24.66	26.21

Protein Annotations

EnsemblPlants:GSMUA_Achr6P26580_001	EnsemblPlants:GSMUA_Achr6T26580_001	EnsemblPlantsGene:GSMUA_Achr6G26580_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	ncoils:Coil
PANTHER:PTHR24015	PANTHER:PTHR24015:SF237	PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI000294D115	UniProt:M0TAF3	MapMan:35.1	:

Description

Putative Pentatricopeptide repeat-containing protein At3g49240 [Source:GMGC_GENE;Acc:GSMUA_Achr6G26580_001]

Coordinates

chr6:-:27277839..27280189

Molecular Weight (calculated)

72906.1 Da

IEP (calculated)

5.291

GRAVY (calculated)

-0.425

Length

657 amino acids

Sequence
(BLAST)

001: MALSKPLFLS HHLKSLKPYY PRPSFPFASH LRLFSFATPE EAAAERRRRK RRLRIEPPLS SLRQQQKPPS SSAPPRSPRT APNPNAPKLP EPISALAGSR
101: LNLHNRILTL IRENDLDEAA LLVRHSIYSN CRPTIFTANA VLHALLRQSR YADLLSLHRF ITQANVSPTV ITVNLLLQAF CDCRKTDIAL EHFRLLLKDD
201: APFPPSPTTY RILAKGLVDN GKLDQALELK DDMLAKAFVP PDPIVYNYLM QGFVKKGDPD KVVSLYEELL EKVGGGKILD GIVYGNLMKG YFGKGMEKGA
301: MEIYRDVLGE GSKVRFGAVS YNLVLDALGR NGKLEEAIDL FDRMLKEHDP PRRITVNLGT FNVMVDAYCL AGRFPDAITA EELYKEMGER GINPDEYTYV
401: LLVESCFGVD RVDDATGYFQ KMVELGLRPN ATAYNKVIGG LVNVVRLDEA KKFFDQMLEK EVKPNVMSYE LLLKGFIDSG RLDDGLKTLK DLLLDDGVTL
501: SQEIKELMEE ALRKEGREEE MGKLYEDVER EKAERLAREA EEKARAEALA KEEEEKKKRE AAEKEAAAAR ASAAAIEAIL GRKKDAANEE STAVGSSAPV
601: SGILGEEKNG SESSVQSETA DSAANCEVLP EERNDGLDDE AKEGSGDADQ QVSASGN

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.