Factsheet for GSMUA_Achr10P10590_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 3
mitochondrion 4
nucleus 1
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P26120_001
GSMUA_Achr3P13120_001
GSMUA_Achr3P13130_001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	GSMUA_Achr1P26120_001	AT2G15400.1	16489121
AT1G10270.1	GSMUA_Achr3P13120_001	AT2G15400.1	16489121
AT1G10270.1	GSMUA_Achr3P13130_001	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0035g01700.t01	Wine grape	mitochondrion	53.07	52.31
Zm00001d032900_P001	Maize	mitochondrion	54.05	41.08
OQU93028	Sorghum	mitochondrion	55.18	38.97
Os05t0365500-01	Rice	nucleus	57.44	38.97
TraesCS2A01G524300.1	Wheat	mitochondrion	51.94	38.81
CDY25066	Canola	cytosol	8.09	38.76
KRH26275	Soybean	mitochondrion	49.35	38.51
TraesCS2D01G527300.1	Wheat	mitochondrion	51.46	37.24
OQU78362	Sorghum	cytosol	40.45	36.5
CDX93444	Canola	mitochondrion	43.53	35.35
KRH06034	Soybean	mitochondrion	49.35	35.26
TraesCS2A01G063500.1	Wheat	mitochondrion	53.56	35.25
TraesCS2D01G061700.1	Wheat	golgi	54.05	35.16
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	55.83	34.02
Bra019952.1-P	Field mustard	mitochondrion	43.53	32.84
CDY20645	Canola	mitochondrion	43.2	32.52
CDY31037	Canola	mitochondrion	42.39	32.47
CDY34898	Canola	mitochondrion	44.82	32.44
CDY09648	Canola	extracellular, mitochondrion, plastid	19.74	32.36
Bra018451.1-P	Field mustard	mitochondrion	42.23	32.34
Bra031706.1-P	Field mustard	mitochondrion	44.5	32.2
CDX94912	Canola	mitochondrion	42.88	32.0
TraesCS2B01G554300.1	Wheat	nucleus	51.46	31.55
AT1G10270.1	Thale cress	mitochondrion	45.63	30.89
Solyc01g103160.2.1	Tomato	nucleus	46.93	29.77
CDY21873	Canola	cytosol	5.18	29.63
HORVU2Hr1G011400.1	Barley	cytosol	37.05	28.59
PGSC0003DMT400064089	Potato	mitochondrion, plastid	47.09	28.09
CDY53878	Canola	mitochondrion	6.47	27.78
CDY65945	Canola	cytosol	30.1	27.39
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	36.73	25.97
GSMUA_Achr9P05870_001	Banana	mitochondrion	26.05	25.12
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	26.21	24.66
AT3G60960.1	Thale cress	mitochondrion	13.92	21.34
CDX95653	Canola	mitochondrion	13.11	20.2
AT3G60980.1	Thale cress	mitochondrion	13.43	20.15
CDY25062	Canola	mitochondrion	11.81	20.11
CDY33104	Canola	mitochondrion	11.81	19.84
CDX95410	Canola	cytosol	1.62	19.23
CDY37773	Canola	mitochondrion	12.78	18.59
Bra004488.1-P	Field mustard	cytosol	12.3	18.49
CDY10671	Canola	mitochondrion	11.65	18.05
CDX80067	Canola	mitochondrion	12.62	17.93
AT5G28380.1	Thale cress	cytosol	11.0	17.44
AT5G28340.1	Thale cress	cytosol	11.65	16.55
Bra000388.1-P	Field mustard	cytosol	8.25	16.45
CDX80068	Canola	mitochondrion	13.11	15.31
Bra004487.1-P	Field mustard	mitochondrion	13.11	15.31
CDX71714	Canola	cytosol	5.83	14.81
CDY37774	Canola	mitochondrion	11.81	13.27
CDY53879	Canola	cytosol	1.29	4.44

Protein Annotations

EnsemblPlants:GSMUA_Achr10P10590_001	EnsemblPlants:GSMUA_Achr10T10590_001	EnsemblPlantsGene:GSMUA_Achr10G10590_001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015
PANTHER:PTHR24015:SF393	PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI00029582C3	UniProt:M0RH35	MapMan:35.1	:

Description

Pentatricopeptide repeat-containing protein At1g10270 [Source:GMGC_GENE;Acc:GSMUA_Achr10G10590_001]

Coordinates

chr10:+:20234283..20236505

Molecular Weight (calculated)

69173.3 Da

IEP (calculated)

8.363

GRAVY (calculated)

-0.243

Length

618 amino acids

Sequence
(BLAST)

001: MIRSPPQTLR AVGFSLPLHS QCRSICSHKR GALLLGPNCP FAAAVAPPLL ALNMSFYRHL LLLRSLRAAP DRCRPLLFGA LSAPSRPFAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP NAPRPPRDPN APRLPDSTSA LVGPRLNLHN RVQSLIRAGD LDAASSTARH AVFSSVRPTV FTCNAITASM LRAGRLDDVV
201: ALFSFFFNQS NIVPNVVSYN ILINAHCNAG RVDVALDVYR HVLDNAPFSP SYVTYRHLTK GLVDADRIQE AIDLLREMLN RGHGADSIVY NTLMAGFIDR
301: GNMEKALELF DELRERCLVY DGVVHSTLME AYFKRGMDKE AMESYQSLLD RQFKMTPVTC NTLIETLLKH DKLAEANKMF ENMLENHTPP SFTAINTDTY
401: NLMVNQRFKE GKILEAIEVF HRQPKKPCIM DVSCFNNIIG KLCENGLLSE AEKLFEEMPE KSVNPDATTY QFLVDACFRE GRTDDALEYF KKTIESSGGS
501: PGFRVVVGFY NMMFEGLVKA GRTNQALETF GKMWERGLKP NRTSYEVLVT QLCKEGNLDG GRELLEQMLR SQINASPEFT AFVFDTFGNA GRSQEIQGLF
601: AGNSGNVASQ TEQVAVMN

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.