CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 6
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80067	Canola	mitochondrion	91.76	89.66
CDX95410	Canola	cytosol	9.88	80.77
CDY10671	Canola	mitochondrion	62.12	66.17
CDY25066	Canola	cytosol	13.88	45.74
CDY53879	Canola	cytosol	14.82	35.0
CDX95653	Canola	mitochondrion	28.47	30.17
CDY53878	Canola	mitochondrion	9.18	27.08
CDY25062	Canola	mitochondrion	23.06	27.0
CDY33104	Canola	mitochondrion	23.29	26.9
CDX71714	Canola	cytosol	14.35	25.1
CDX80068	Canola	mitochondrion	26.12	20.98
CDY37774	Canola	mitochondrion	24.94	19.27
CDY09648	Canola	extracellular, mitochondrion, plastid	15.53	17.51
GSMUA_Achr10P...	Banana	mitochondrion, plastid	18.59	12.78
CDX93444	Canola	mitochondrion	20.47	11.43
CDY21873	Canola	cytosol	2.82	11.11
CDY31037	Canola	mitochondrion	20.47	10.78
CDX94912	Canola	mitochondrion	20.94	10.75
CDY20645	Canola	mitochondrion	20.47	10.6
CDY34898	Canola	mitochondrion	21.18	10.54
Zm00001d032900_P001	Maize	mitochondrion	19.29	10.09
TraesCS2A01G524300.1	Wheat	mitochondrion	18.59	9.55
CDY65945	Canola	cytosol	14.82	9.28
OQU93028	Sorghum	mitochondrion	19.06	9.26
TraesCS2D01G527300.1	Wheat	mitochondrion	18.59	9.25
Os05t0365500-01	Rice	nucleus	19.29	9.0
TraesCS2A01G063500.1	Wheat	mitochondrion	18.82	8.52
TraesCS2D01G061700.1	Wheat	golgi	18.82	8.42
TraesCS2B01G554300.1	Wheat	nucleus	18.82	7.94
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	18.35	7.69
OQU78362	Sorghum	cytosol	12.24	7.59
CDY08118	Canola	plastid	9.18	6.54
CDY00193	Canola	plastid	8.71	6.37
CDX83077	Canola	mitochondrion, plastid	9.18	6.21
CDX68524	Canola	cytosol, mitochondrion, plastid	9.18	6.21
CDX86985	Canola	mitochondrion	8.47	6.11
HORVU2Hr1G011400.1	Barley	cytosol	10.35	5.49
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	10.12	4.92
CDY05914	Canola	cytosol	1.18	3.31
CDY05913	Canola	cytosol	3.76	3.29

Protein Annotations

EnsemblPlants:CDY37773	EnsemblPlantsGene:GSBRNA2T00064707001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFscan:PS51375	ProteinID:CDY37773	ProteinID:CDY37773.1
SEG:seg	TIGRFAMs:TIGR00756	UniParc:UPI0004EEECC8	UniProt:A0A078HLN2	MapMan:35.1	:

Description

BnaC04g00520DBnaC04g00520D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HLN2]

Coordinates

chrLK032408:-:8438..9751

Molecular Weight (calculated)

48069.6 Da

IEP (calculated)

6.356

GRAVY (calculated)

-0.239

Length

425 amino acids

Sequence
(BLAST)

001: MSLTRRINLL VGLSKSLQFS NRRHMSTCVA SATVARYPLG KDLSWLPRNP TSEDVNRAAD LVKGRPVSLL YRVLTMIELS DVDGAVELAR LSVLKDDRGG
101: HDTIFICNAV IGAMCQAKRF EEGIGLFHYF FNENNIVPNI VSFNHVIKAF CDLGRVDDAL QLYRHAARFG ADKETFSVLT QALVHAYGYG EAGIFVGLSR
201: CLTTADDWTP MLIEIRGRLD QMNAEDADDY FHTNRLKFDD DDDDGVFKSI ATIFVEYWLK HGNEEKAMEC YSTIRTWESL PATTGNTLLR ILLENCKRTE
301: AGALIEVNAK DLYHNMLKKH KRFDSETINI MAMETFNESQ QQGRKIMVRC YSNVIARLCE RGMMSEAEGL FEDMCSDKDL SPPPDVSTFR SMVNGYVRAG
401: RVDDAIKTSN KLAILKLRKV SIYED

Best Arabidopsis Sequence Match ( AT3G60960.2 )
(BLAST)

001: MSLLRRIVRN STVSKAVPVA KAFMPYPLGR DPSSLPKLDP VSISYIDSRP ISLRYRVRAM IEMSNLDEAS KLSRLAVLNG FLVDRDTVFI CNSVIGAMCS
101: AKRYDDAISL FNYFFNESQT LPNTLSCDLI IKAHCDQGHV DDALELYRHI LLDGRVAPGI ETYMILAKAL VDAKRFDEAC VLARSMSCCS FMVYDILIRG
201: FLDIGNFVKA SQIFEELKGL DSKLPGREYH KANAIFNVSF MNYWFKQGKD EEAMEILANL EDAQVLNPIV GNRVLQVLVK HGKKTEAWEL FGEMIEICDS
301: ETVDIMSEYF SEKTVPFERL RKTCYRKMIV SLCEHGKVSD AEKLFAEMFT DVDGGDLLVG PDLLIFRAMI NGYVSVGRVD DAIKTLNKMR ISNLRKLAIH
401: QAP

Arabidopsis Description

Tetratricopeptide repeat (TPR)-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A178V6P2]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.