CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol, plastid, mitochondrion

Predictor Summary:

plastid 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83077	Canola	mitochondrion, plastid	90.76	90.76
CDY00193	Canola	plastid	76.43	82.62
CDX86985	Canola	mitochondrion	73.73	78.61
CDY08118	Canola	plastid	72.29	76.17
CDY05914	Canola	cytosol	17.99	74.83
KRH64444	Soybean	mitochondrion	57.32	57.05
HORVU3Hr1G052300.1	Barley	plastid	12.1	56.72
KRH53501	Soybean	mitochondrion	56.85	56.49
PGSC0003DMT400023464	Potato	plastid	57.48	55.37
VIT_16s0098g01840.t01	Wine grape	plastid	56.85	54.67
Solyc03g083280.2.1	Tomato	nucleus	41.88	51.77
CDY05913	Canola	cytosol	34.87	44.97
EES03220	Sorghum	mitochondrion, plastid	46.34	43.69
Zm00001d044388_P001	Maize	plastid	38.06	43.14
GSMUA_Achr9P05870_001	Banana	mitochondrion	43.79	42.9
GSMUA_Achr6P26580_001	Banana	mitochondrion, plastid	44.11	42.16
Os11t0433600-01	Rice	nucleus	32.64	42.09
HORVU3Hr1G052280.1	Barley	cytosol, plastid	43.63	41.33
TraesCS3D01G216600.1	Wheat	cytosol	43.63	41.33
TraesCS3A01G214000.1	Wheat	cytosol	43.15	40.87
TraesCS3B01G244700.1	Wheat	cytosol	43.47	40.56
TraesCS1B01G369200.1	Wheat	mitochondrion	35.19	34.37
TraesCS1D01G357400.1	Wheat	mitochondrion	33.92	33.49
HORVU1Hr1G080900.3	Barley	cytosol, plastid	35.03	32.84
EES19865	Sorghum	mitochondrion	34.71	32.83
Zm00001d038733_P001	Maize	mitochondrion	33.76	31.83
TraesCS1A01G352600.1	Wheat	cytosol	21.34	31.38
Os05t0534000-01	Rice	cytosol	12.58	27.43
CDY21873	Canola	cytosol	4.46	25.93
CDX93444	Canola	mitochondrion	23.89	19.71
CDY09648	Canola	extracellular, mitochondrion, plastid	11.31	18.83
CDY20645	Canola	mitochondrion	24.36	18.64
CDY31037	Canola	mitochondrion	23.89	18.59
CDY34898	Canola	mitochondrion	25.0	18.38
CDX94912	Canola	mitochondrion	24.2	18.36
CDY53878	Canola	mitochondrion	3.66	15.97
CDY25066	Canola	cytosol	3.18	15.5
CDY65945	Canola	cytosol	15.92	14.73
CDX95653	Canola	mitochondrion	6.21	9.73
CDY37773	Canola	mitochondrion	6.21	9.18
CDY25062	Canola	mitochondrion	5.25	9.09
CDY33104	Canola	mitochondrion	5.25	8.97
CDX80067	Canola	mitochondrion	5.57	8.05
CDY10671	Canola	mitochondrion	4.94	7.77
CDX95410	Canola	cytosol	0.64	7.69
CDX80068	Canola	mitochondrion	6.37	7.56
CDY37774	Canola	mitochondrion	5.89	6.73
CDX71714	Canola	cytosol	1.43	3.7
CDY53879	Canola	cytosol	0.96	3.33

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	EnsemblPlants:CDX68524	ProteinID:CDX68524	ProteinID:CDX68524.1	ncoils:Coil
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00126064001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF12854	PFAM:PF13041	PFAM:PF13812	PFscan:PS51375	PANTHER:PTHR24015
PANTHER:PTHR24015:SF237	InterPro:Pentatricopeptide_repeat	SUPFAM:SSF48452	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EEC33D
SEG:seg	:	:	:	:	:

Description

BnaC01g26020D

Coordinates

chrLK031788:+:3266099..3268323

Molecular Weight (calculated)

70837.0 Da

IEP (calculated)

5.182

GRAVY (calculated)

-0.399

Length

628 amino acids

Sequence
(BLAST)

001: MSIAKAAFLN HLQTLARAYR PRLPPPFSAV RCMSFATQEE AAAERRKRKR RLRMEPPLNS FNRSHQQQQQ PQISRPIQNP NIPKLPESVS SLTGKRLDLH
101: NHILKLIREN DLEEAALFTR HSVYSNCRPT IFTVNAVLAA QLRQGKYAAL LQLHRFINQA GIAANIVTYN LIFQAYLDVR KPEIALEHYK LFIDNAPLNP
201: SIATFRILVK GLVDNDSLEK AMEVKEDMCV KGFVPDPVVY SYLMIGCVKS SDADGVLQLY DELKEKLGGF VEDGVVYGQL LKGYFMKEME KEAIECYEEA
301: VGENSKVQMS AMAYNYVLEA LSENGKFDEA LKLFDAMKNE HSPPKRLALN LGSFNVMVNG YCAEGKFGEA VEVFRQIGAF RCSPDTLSFN NLMNQLCENG
401: LLAEAENLYG EMDEKKVKPD EYTYGLLMDT CFKEGKIDEG AAYYKTMVES SLRPNLAVYN RLQDQLVKAG KLDDAKSFFD MMVSKLSMDD EAYKFIMSAL
501: SEAGRLDDVL KIVDVMLDDE TVRVSEELKE FVKEELRKEG REDDLQKLMD EKERLKTEAK AKELGAAEAK NRSTNFRIAS LIPKQEQEKS DNVKMLWDNN
601: GVAEEIDVAD VVAQGKEAGG SNGQAPPC

Best Arabidopsis Sequence Match ( AT3G49240.1 )
(BLAST)

001: MSISKAAFLN HLQTLSRSYR HRVLPQPFLA VRYMSFATQE EAAAERRRRK RRLRMEPPVN SFNRSQQQQS QIPRPIQNPN IPKLPESVSA LVGKRLDLHN
101: HILKLIREND LEEAALYTRH SVYSNCRPTI FTVNTVLAAQ LRQAKYGALL QLHGFINQAG IAPNIITYNL IFQAYLDVRK PEIALEHYKL FIDNAPLNPS
201: IATFRILVKG LVSNDNLEKA MEIKEDMAVK GFVVDPVVYS YLMMGCVKNS DADGVLKLYQ ELKEKLGGFV DDGVVYGQLM KGYFMKEMEK EAMECYEEAV
301: GENSKVRMSA MAYNYVLEAL SENGKFDEAL KLFDAVKKEH NPPRHLAVNL GTFNVMVNGY CAGGKFEEAM EVFRQMGDFK CSPDTLSFNN LMNQLCDNEL
401: LAEAEKLYGE MEEKNVKPDE YTYGLLMDTC FKEGKIDEGA AYYKTMVESN LRPNLAVYNR LQDQLIKAGK LDDAKSFFDM MVSKLKMDDE AYKFIMRALS
501: EAGRLDEMLK IVDEMLDDDT VRVSEELQEF VKEELRKGGR EGDLEKLMEE KERLKAEAKA KELADAEEKK KAQSINIAAL IPPKAVEEKK ETAKLLWENE
601: AGGVEEADVV EMAKGVEAGG SNGQDPPSC

Arabidopsis Description

EMB1796Pentatricopeptide repeat-containing protein At3g49240, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M3A8]
SUBAcon: [cytosol,plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.