CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71219
CDX71220
CDY36631
CDY37227
CDY62312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G10270.1	CDX71219	AT2G15400.1	16489121
AT1G10270.1	CDX71220	AT2G15400.1	16489121
AT1G10270.1	CDY36631	AT2G15400.1	16489121
AT1G10270.1	CDY37227	AT2G15400.1	16489121
AT1G10270.1	CDY62312	AT2G15400.1	16489121

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019952.1-P	Field mustard	mitochondrion	96.45	89.62
CDX94912	Canola	mitochondrion	95.53	87.8
CDY65945	Canola	cytosol	63.99	71.72
CDY34898	Canola	mitochondrion	78.06	69.56
CDY20645	Canola	mitochondrion	73.59	68.21
AT1G10270.1	Thale cress	mitochondrion	77.27	64.4
CDY31037	Canola	mitochondrion	63.86	60.22
VIT_12s0035g01700.t01	Wine grape	mitochondrion	41.0	49.76
GSMUA_Achr10P...	Banana	mitochondrion, plastid	35.35	43.53
CDY25066	Canola	cytosol	6.31	37.21
CDY09648	Canola	extracellular, mitochondrion, plastid	17.61	35.54
TraesCS2A01G524300.1	Wheat	mitochondrion	35.87	33.01
Zm00001d032900_P001	Maize	mitochondrion	34.82	32.6
OQU93028	Sorghum	mitochondrion	36.27	31.54
Solyc01g103160.2.1	Tomato	nucleus	40.34	31.52
TraesCS2D01G527300.1	Wheat	mitochondrion	34.95	31.15
CDY21873	Canola	cytosol	4.34	30.56
Os05t0365500-01	Rice	nucleus	36.01	30.08
CDY53878	Canola	mitochondrion	5.52	29.17
PGSC0003DMT400064089	Potato	mitochondrion, plastid	39.29	28.86
TraesCS2D01G061700.1	Wheat	golgi	35.35	28.32
TraesCS2A01G063500.1	Wheat	mitochondrion	34.69	28.11
OQU78362	Sorghum	cytosol	24.57	27.3
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	35.61	26.73
TraesCS2B01G554300.1	Wheat	nucleus	35.09	26.49
CDY00193	Canola	plastid	19.32	25.3
CDX83077	Canola	mitochondrion, plastid	20.11	24.36
CDX86985	Canola	mitochondrion	18.79	24.28
CDY08118	Canola	plastid	18.92	24.16
CDX68524	Canola	cytosol, mitochondrion, plastid	19.71	23.89
HORVU2Hr1G011400.1	Barley	cytosol	24.57	23.35
CDY25062	Canola	mitochondrion	10.64	22.31
CDY33104	Canola	mitochondrion	10.64	22.01
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	24.97	21.74
CDX95653	Canola	mitochondrion	11.17	21.2
CDY37773	Canola	mitochondrion	11.43	20.47
CDX80067	Canola	mitochondrion	11.04	19.31
CDX95410	Canola	cytosol	1.31	19.23
CDY10671	Canola	mitochondrion	9.72	18.55
CDX71714	Canola	cytosol	5.91	18.52
CDX80068	Canola	mitochondrion	11.83	17.01
CDY05914	Canola	cytosol	3.29	16.56
CDY37774	Canola	mitochondrion	11.43	15.82
CDY05913	Canola	cytosol	9.46	14.78
CDY53879	Canola	cytosol	1.58	6.67

Protein Annotations

EnsemblPlants:CDX93444	EnsemblPlantsGene:GSBRNA2T00156110001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFAM:PF13041	PFscan:PS51375	ProteinID:CDX93444	ProteinID:CDX93444.1	SEG:seg
SUPFAM:SSF48452	TIGRFAMs:TIGR00756	UniParc:UPI0004EED3A1	MapMan:35.1	:	:

Description

BnaA06g06040D

Coordinates

chrLK031876:-:219667..222093

Molecular Weight (calculated)

85282.2 Da

IEP (calculated)

8.698

GRAVY (calculated)

-0.617

Length

761 amino acids

Sequence
(BLAST)

001: MSLRRLLRHR LYAATTTTTP IPITLIQQRF YNISFSPQTE DPKTNAHTQE SFQLNDPSQF QIRNRTFSSA EEADAARRKQ RRQSRIQPPL NALRRDPPPK
101: RDPNAPRLPD STSSLVGQRL NLHNRVQSLI RASDLDAASR LARNSVFSST RPTVFTCNAI IAAMCRAKRY GDSISLFEFF FKRNHIVPNV VSYNQIINAH
201: CDEGHVEEAL EVYRYVLANS PFAPSSVTYR HLTRGLVQAG RSGDAASLLR EMLSKGLAAD SIAYSNLIRG FLDLGELDKA NEFFDELRSK CTVYDGIVNA
301: TFMEYWFEKR EDEEAMECYR SLLEKKFRMY PHTGNVLLEV FLKYGKKSEA WDLFNEMLDN HTPPNILSVN SETVGIMVNE CFKMGKFEEA VETFKKVGRK
401: PTSRPFVMDY VGYCNVVTRF CEHGMLPEAE RLFAEGVGKS LPADAPSHRA MIDAYLKAER IDDALEMLNR MVGVNLRVVA DFGTRVFGEL IKNGKVVESV
501: EVLTKMGERE PKPDSSIYDV VVRGLCDGGA LDQAKDIIGQ MVGYSVRVAP VLREFIIATF EKAERREEIE KTLNTVTRPI RNSVRSGNTA PGVPSVLGAT
601: SAAPQQPREK APWTSQGPGS GGDNGQTTGG TYKANNGQNP SWSNTSSNQQ QQPWSNQTAG RQTPSWSSQA PGYQQQQSWS QQPGWSTGQQ SAWTGQQQQQ
701: QWSNQTASHQ QAQWSNPTSG QVAANQAPWS NSGNGHLSQQ QEPVSSSSHE WQEKKVVELR N

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.