CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
nucleus 1
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004487.1-P	Field mustard	mitochondrion	100.0	100.0
CDY37774	Canola	mitochondrion	64.84	62.36
CDY25066	Canola	cytosol	9.64	39.53
CDX95410	Canola	cytosol	3.59	36.54
CDY53878	Canola	mitochondrion	7.94	29.17
CDY53879	Canola	cytosol	9.45	27.78
CDY33104	Canola	mitochondrion	19.09	27.45
CDY25062	Canola	mitochondrion	18.71	27.27
CDX95653	Canola	mitochondrion	20.42	26.93
CDY37773	Canola	mitochondrion	20.98	26.12
CDY10671	Canola	mitochondrion	19.09	25.31
CDX80067	Canola	mitochondrion	20.6	25.06
CDX71714	Canola	cytosol	9.83	21.4
CDY09648	Canola	extracellular, mitochondrion, plastid	12.67	17.77
GSMUA_Achr10P...	Banana	mitochondrion, plastid	15.31	13.11
CDX93444	Canola	mitochondrion	17.01	11.83
CDY34898	Canola	mitochondrion	18.15	11.24
CDY31037	Canola	mitochondrion	16.82	11.03
CDX94912	Canola	mitochondrion	17.2	10.99
CDY20645	Canola	mitochondrion	17.01	10.96
CDY21873	Canola	cytosol	2.08	10.19
CDY65945	Canola	cytosol	12.29	9.57
TraesCS2A01G524300.1	Wheat	mitochondrion	13.8	8.83
Zm00001d032900_P001	Maize	mitochondrion	13.42	8.73
TraesCS2D01G527300.1	Wheat	mitochondrion	13.42	8.31
OQU93028	Sorghum	mitochondrion	13.61	8.23
Os05t0365500-01	Rice	nucleus	13.8	8.01
TraesCS2D01G061700.1	Wheat	golgi	13.8	7.68
TraesCS2A01G063500.1	Wheat	mitochondrion	12.85	7.24
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	13.8	7.2
TraesCS2B01G554300.1	Wheat	nucleus	13.42	7.04
CDY00193	Canola	plastid	7.56	6.88
CDY08118	Canola	plastid	7.18	6.38
CDX68524	Canola	cytosol, mitochondrion, plastid	7.56	6.37
CDX86985	Canola	mitochondrion	6.99	6.28
OQU78362	Sorghum	cytosol	8.13	6.28
CDX83077	Canola	mitochondrion, plastid	7.18	6.05
HORVU2Hr1G011400.1	Barley	cytosol	7.18	4.74
CDY05914	Canola	cytosol	1.32	4.64
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	6.81	4.12
CDY05913	Canola	cytosol	3.4	3.7

Protein Annotations

EnsemblPlants:CDX80068	EnsemblPlantsGene:GSBRNA2T00132958001	Gene3D:1.25.40.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR002885	InterPro:IPR011990	InterPro:Pentatricopeptide_repeat	InterPro:TPR-like_helical_dom_sf	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
PFAM:PF01535	PFscan:PS51375	ProteinID:CDX80068	ProteinID:CDX80068.1	SEG:seg	TIGRFAMs:TIGR00756
UniParc:UPI00025472C6	MapMan:35.1	:	:	:	:

Description

BnaA05g00880D

Coordinates

chrLK031819:+:1646405..1647994

Molecular Weight (calculated)

60639.9 Da

IEP (calculated)

7.649

GRAVY (calculated)

-0.237

Length

529 amino acids

Sequence
(BLAST)

001: MMMMLLRHRT LPKSPSLLSR HFSSQCEDEK SVYRRVRSLI GSSELDKAVE YARSPFVVKS RRATRSAICE LVVTALYDAK RYRELLSLIF KFSIRDRDPK
101: LYYGLNCLNL QSRAREKRNL ISYAKYEAEA KRLELNKCLV SNPPPYPIIL GGGGDVIISP PKNQYYDESH LYSTVKLLIQ NLSDLDTAVE YARFTAFTTT
201: RTETTTATCD LIIAALCEAK RYMDAYHLFH YFFNQSNISL SVDCCNHIVK ALCDDGHAHV ALQLHHHDDA PLDYQTYRIL TKALFLSGKI DEALDLVKDI
301: FSLNNPDKYD SVFLDQSDFD KAWALCCEEV ISSNNVGYPT VTKTAVTVSL IEYYFSKGED EKAMEIYTCL VSEKIEDASI RPLFQLLSKY GKETEAWSLV
401: KNLRFTDHSE HIRFMMNQFF RYQLRMTNEA IDTLQKVRKI EDFITTCKFN HAPFSNVISR CCQDGNTLSH AKLILAGLLN KHDPSAYKVS TFQEMINAYL
501: KAGRLDDALE TANMMVDANL RLVSILMKS

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.