CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 3
extracellular 4
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	secretory
MultiLoc:	extracellular
Predotar:	mitochondrion
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	mitochondrion

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY21873	Canola	cytosol	14.32	50.0
CDY25066	Canola	cytosol	10.34	30.23
CDY53878	Canola	mitochondrion	9.55	25.0
CDX95410	Canola	cytosol	3.18	23.08
GSMUA_Achr10P...	Banana	mitochondrion, plastid	32.36	19.74
CDX95653	Canola	mitochondrion	18.83	17.71
CDX93444	Canola	mitochondrion	35.54	17.61
CDY20645	Canola	mitochondrion	35.54	16.32
CDX94912	Canola	mitochondrion	35.81	16.3
CDY31037	Canola	mitochondrion	34.48	16.11
CDY65945	Canola	cytosol	28.91	16.05
CDY10671	Canola	mitochondrion	16.71	15.79
CDX80067	Canola	mitochondrion	18.04	15.63
CDY37773	Canola	mitochondrion	17.51	15.53
CDY34898	Canola	mitochondrion	35.01	15.46
CDY25062	Canola	mitochondrion	14.85	15.43
CDY33104	Canola	mitochondrion	14.85	15.22
Zm00001d032900_P001	Maize	mitochondrion	31.3	14.51
OQU78362	Sorghum	cytosol	25.46	14.01
OQU93028	Sorghum	mitochondrion	32.36	13.94
TraesCS2A01G524300.1	Wheat	mitochondrion	29.97	13.66
TraesCS2D01G527300.1	Wheat	mitochondrion	30.5	13.47
Os05t0365500-01	Rice	nucleus	32.36	13.39
TraesCS2A01G063500.1	Wheat	mitochondrion	31.83	12.78
CDX80068	Canola	mitochondrion	17.77	12.67
TraesCS2D01G061700.1	Wheat	golgi	31.83	12.63
CDY37774	Canola	mitochondrion	18.04	12.36
CDX71714	Canola	cytosol	7.96	12.35
CDY00193	Canola	plastid	18.57	12.05
HORVU2Hr1G011400.1	Barley	cytosol	25.2	11.86
TraesCS2B01G076200.1	Wheat	golgi, nucleus, plastid	31.83	11.83
CDY08118	Canola	plastid	18.57	11.74
CDX86985	Canola	mitochondrion	18.04	11.54
TraesCS2B01G554300.1	Wheat	nucleus	30.5	11.41
CDX68524	Canola	cytosol, mitochondrion, plastid	18.83	11.31
CDX83077	Canola	mitochondrion, plastid	18.57	11.15
HORVU2Hr1G011350.4	Barley	cytosol, mitochondrion	25.2	10.87
CDY53879	Canola	cytosol	3.98	8.33
CDY05913	Canola	cytosol	10.08	7.8
CDY05914	Canola	cytosol	2.92	7.28

Protein Annotations

Gene3D:1.25.40.10	MapMan:35.1	UniProt:A0A078FCA4	EnsemblPlants:CDY09648	ProteinID:CDY09648	ProteinID:CDY09648.1
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	EnsemblPlantsGene:GSBRNA2T00031294001	InterPro:IPR002885	InterPro:IPR011990
PFAM:PF01535	PFAM:PF13041	PFscan:PS51257	PFscan:PS51375	PANTHER:PTHR24015	PANTHER:PTHR24015:SF393
InterPro:Pentatricopeptide_repeat	SUPFAM:SSF81901	TIGRFAMs:TIGR00756	InterPro:TPR-like_helical_dom_sf	UniParc:UPI0004EC8EAB	SEG:seg

Description

BnaC07g34130DBnaC07g34130D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FCA4]

Coordinates

chrLK031998:+:178768..179954

Molecular Weight (calculated)

42734.9 Da

IEP (calculated)

8.055

GRAVY (calculated)

-0.162

Length

377 amino acids

Sequence
(BLAST)

001: MFSTKIAKLI FLAKTAKSCF FLTSSSSCTN VRCPLSMLGH RVHFLINEVS DLDSAANHAR LAVRKRLNPE KALFTCNAML LIKPDIAACN LIIKSHCEEG
101: RLDNALRLYN HLLRHPPSPN HKTYDLLTKA LVDAGMMDQA LELLLRGRAE LFNFQQPGMY MNLIGGFLQQ GNLDMAYQLG DDFKTCSIRN KITVLNSVFV
201: EYLFKQGNDE KAMELYRNSL NNDGFTANGH VGHPYLEVLL KYGKKTQAWA LFEYMLDNYD ECIGLGDETV NLMLNECIKE GKFSDAVNIL AKSKAKLKYF
301: PVGAYRNLIT KLCHNARLSE AESVFDEWLK QEFTKPDDAT YTSLIHAYIK AERVEDAIET VNQLMAAKLR RVTNMCL

Best Arabidopsis Sequence Match ( AT1G10270.1 )
(BLAST)

001: MSLSHLLRRL CTTTTTTRSP LSISFLHQRI HNISLSPANE DPETTTGNNQ DSEKYPNLNP IPNDPSQFQI PQNHTPPIPY PPIPHRTMAF SSAEEAAAER
101: RRRKRRLRIE PPLHALRRDP SAPPPKRDPN APRLPDSTSA LVGQRLNLHN RVQSLIRASD LDAASKLARQ SVFSNTRPTV FTCNAIIAAM YRAKRYSESI
201: SLFQYFFKQS NIVPNVVSYN QIINAHCDEG NVDEALEVYR HILANAPFAP SSVTYRHLTK GLVQAGRIGD AASLLREMLS KGQAADSTVY NNLIRGYLDL
301: GDFDKAVEFF DELKSKCTVY DGIVNATFME YWFEKGNDKE AMESYRSLLD KKFRMHPPTG NVLLEVFLKF GKKDEAWALF NEMLDNHAPP NILSVNSDTV
401: GIMVNECFKM GEFSEAINTF KKVGSKVTSK PFVMDYLGYC NIVTRFCEQG MLTEAERFFA EGVSRSLPAD APSHRAMIDA YLKAERIDDA VKMLDRMVDV
501: NLRVVADFGA RVFGELIKNG KLTESAEVLT KMGEREPKPD PSIYDVVVRG LCDGDALDQA KDIVGEMIRH NVGVTTVLRE FIIEVFEKAG RREEIEKILN
601: SVARPVRNAG QSGNTPPRVP AVFGTTPAAP QQPRDRAPWT SQGVVHSNSG WANGTAGQTA GGAYKANNGQ NPSWSNTSDN QQQQSWSNQT AGQQPPSWSR
701: QAPGYQQQQS WSQQSGWSSP SGHQQSWTNQ TAGQQQPWAN QTPGQQQQWA NQTPGQQQQL ANQTPGQQQQ WANQTPGQQQ QWANQNNGHQ QPWANQNTGH
801: QQSWANQTPS QQQPWANQTT GQQQGWGNQT TGQQQQWANQ TAGQQSGWTA QQQWSNQTAS HQQSQWLNPV PGEVANQTPW SNSVDSHLPQ QQEPGPSHEC
901: QETQEKKVVE LRN

Arabidopsis Description

GRP23Pentatricopeptide repeat-containing protein At1g10270 [Source:UniProtKB/Swiss-Prot;Acc:Q9SY69]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.